RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 ILKQ13418 452 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 PARP15Q460N3 678 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 INO80DQ53TQ3 878 aaPredicted RBP12.66□□□□□ -0.38
PRKDC-207ENST00000536483 ERMARDQ5T6L9 678 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 RWDD4Q6NW29 188 aaKnown RBP12.66□□□□□ -0.38
PRKDC-207ENST00000536483 LRRC69Q6ZNQ3 347 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 VPS36Q86VN1 386 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 TRIM69Q86WT6 500 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 NIPA2Q8N8Q9 360 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 UBL7Q96S82 380 aaPredicted RBP12.66□□□□□ -0.38
PRKDC-207ENST00000536483 DNAJC7Q99615 494 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 SPON2Q9BUD6 331 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 TSPY26PQ9H489 355 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 CATSPERBQ9H7T0 1116 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 RAI2Q9Y5P3 530 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 WASF2Q9Y6W5 498 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 DOCK9Q9BZ29 2069 aa12.66□□□□□ -0.38
PRKDC-207ENST00000536483 NYNRINQ9P2P1 1898 aaKnown RBP12.65□□□□□ -0.38
PRKDC-207ENST00000536483 A0A087X0T9 212 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 PRAMEF26H0Y7S4 382 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 TRIM38O00635 465 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 RRP8O43159 456 aaKnown RBP12.65□□□□□ -0.38
PRKDC-207ENST00000536483 CBFA2T2O43439 604 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 SIGLEC6O43699 453 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 LRCH4O75427 683 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 RNF8O76064 485 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 GSRP00390 522 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 FAM228BP0C875 321 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 ACP1P24666 158 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 MIPP30301 263 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 CASP14P31944 242 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 NDST2P52849 883 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 TAS2R38P59533 333 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 INSM1Q01101 510 aaPredicted RBP12.65□□□□□ -0.38
PRKDC-207ENST00000536483 TRIM14Q14142 442 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 POLD3Q15054 466 aaPredicted RBP12.65□□□□□ -0.38
PRKDC-207ENST00000536483 ASTE1Q2TB18 679 aaPredicted RBP12.65□□□□□ -0.38
PRKDC-207ENST00000536483 PROX2Q3B8N5 592 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 SETMARQ53H47 684 aaPredicted RBP12.65□□□□□ -0.38
PRKDC-207ENST00000536483 CARD16Q5EG05 197 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 PIP5KL1Q5T9C9 394 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 AFMIDQ63HM1 303 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 SPECC1LQ69YQ0 1117 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 SCYL2Q6P3W7 929 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 ALKBH5Q6P6C2 394 aaKnown RBP12.65□□□□□ -0.38
PRKDC-207ENST00000536483 LINGO4Q6UY18 593 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 DPY19L3Q6ZPD9 716 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 KLK6Q92876 244 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 ZNF653Q96CK0 615 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 KLHDC7BQ96G42 594 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 MYOCQ99972 504 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 TRIM7Q9C029 511 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 KLC2Q9H0B6 622 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 PRORYQ9H606 182 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 LRRC19Q9H756 370 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 PREBQ9HCU5 417 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 DNAI1Q9UI46 699 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 HPCAL4Q9UM19 191 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 CLCA2Q9UQC9 943 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 MFHAS1Q9Y4C4 1052 aa12.65□□□□□ -0.38
PRKDC-207ENST00000536483 PTPRQQ9UMZ3 2332 aa12.65□□□□□ -0.39
PRKDC-207ENST00000536483 SSU72P8A0A1W2PR75 194 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 SLC31A1O15431 190 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 ATMINO43313 823 aaPredicted RBP12.64□□□□□ -0.39
PRKDC-207ENST00000536483 BRINP1O60477 761 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 RNGTTO60942 597 aaKnown RBP12.64□□□□□ -0.39
PRKDC-207ENST00000536483 PRLRP16471 622 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 MAPK8IP2Q13387 824 aaPredicted RBP12.64□□□□□ -0.39
PRKDC-207ENST00000536483 SERINC3Q13530 473 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 PIGHQ14442 188 aaPredicted RBP12.64□□□□□ -0.39
PRKDC-207ENST00000536483 BOLA3Q53S33 107 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 TDRD12Q587J7 1177 aaKnown RBP12.64□□□□□ -0.39
PRKDC-207ENST00000536483 ZSCAN30Q86W11 494 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 DNAAF5Q86Y56 855 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 VSTM4Q8IW00 320 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 SLC25A45Q8N413 288 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 TMEM145Q8NBT3 493 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 CHST14Q8NCH0 376 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 OR8K1Q8NGG5 319 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 SNIP1Q8TAD8 396 aaKnown RBP12.64□□□□□ -0.39
PRKDC-207ENST00000536483 CPLX3Q8WVH0 158 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 RFFLQ8WZ73 363 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 PEBP4Q96S96 227 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 HEPHQ9BQS7 1158 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 SNRNP25Q9BV90 132 aaKnown RBP12.64□□□□□ -0.39
PRKDC-207ENST00000536483 CAAP1Q9H8G2 361 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 IL36AQ9UHA7 158 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 AP4E1Q9UPM8 1137 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 MYLKQ15746 1914 aa12.64□□□□□ -0.39
PRKDC-207ENST00000536483 SHROOM3Q8TF72 1996 aa12.63□□□□□ -0.39
PRKDC-207ENST00000536483 A0A1W2PQU0 124 aa12.63□□□□□ -0.39
PRKDC-207ENST00000536483 RASA4BC9J798 803 aa12.63□□□□□ -0.39
PRKDC-207ENST00000536483 RASA4O43374 803 aa12.63□□□□□ -0.39
PRKDC-207ENST00000536483 AP1G1O43747 822 aa12.63□□□□□ -0.39
PRKDC-207ENST00000536483 PRPSAP2O60256 369 aa12.63□□□□□ -0.39
PRKDC-207ENST00000536483 ZIC2O95409 532 aaPredicted RBP12.63□□□□□ -0.39
PRKDC-207ENST00000536483 THEGLP0DJG4 465 aa12.63□□□□□ -0.39
PRKDC-207ENST00000536483 DGKAP23743 735 aa12.63□□□□□ -0.39
PRKDC-207ENST00000536483 ITGB7P26010 798 aa12.63□□□□□ -0.39
PRKDC-207ENST00000536483 RECQLP46063 649 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms