RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 CELA3BP08861 270 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 ACTN1P12814 892 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 F8A1P23610 371 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 STX2P32856 288 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 SPAM1P38567 509 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 CCT3P49368 545 aaKnown RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 CLCN4P51793 760 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 VAV2P52735 878 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 ADKP55263 362 aaKnown RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 ERVK-21P61565 698 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 NAA20P61599 178 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 NCALDP61601 193 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 RPL10AP62906 217 aaKnown RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 EXOSC10Q01780 885 aaKnown RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 TARDBPQ13148 414 aaKnown RBP eCLIP5.6□□□□□ -1.51
CD44-236ENST00000533222 ATP1A4Q13733 1029 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 COTL1Q14019 142 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 GALNT3Q14435 633 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 FAM83BQ5T0W9 1011 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 AGAP7PQ5VUJ5 663 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 PAPD7Q5XG87 772 aaKnown RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 KRT40Q6A162 431 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 ANKRD40Q6AI12 368 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 ZYG11AQ6WRX3 759 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 LPCAT2Q7L5N7 544 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 GPR155Q7Z3F1 870 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 TBC1D1Q86TI0 1168 aaPredicted RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 PRUNE1Q86TP1 453 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 ZNF354CQ86Y25 554 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 HPS6Q86YV9 775 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 TMEM139Q8IV31 216 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 ARL14Q8N4G2 192 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 DPP10Q8N608 796 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 PLD5Q8N7P1 536 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 NAT8LQ8N9F0 302 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 TXNDC5Q8NBS9 432 aaKnown RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 DENND6BQ8NEG7 585 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 MCOLN3Q8TDD5 553 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 SSH3Q8TE77 659 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 TGFBRAP1Q8WUH2 860 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 DEPDC1BQ8WUY9 529 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 SHC3Q92529 594 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 TTC25Q96NG3 672 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 SERPINB12Q96P63 405 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 RIT2Q99578 217 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 BDH2Q9BUT1 245 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 KATNAL1Q9BW62 490 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 ANO3Q9BYT9 981 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 RBM38Q9H0Z9 239 aaKnown RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 TRIM45Q9H8W5 580 aaPredicted RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 INTS10Q9NVR2 710 aaKnown RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 NKIRAS2Q9NYR9 191 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 STX18Q9P2W9 335 aaKnown RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 MTRRQ9UBK8 725 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 FETUBQ9UGM5 382 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 VPS51Q9UID3 782 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 ZNF112Q9UJU3 913 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 CDH7Q9ULB5 785 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 DERAQ9Y315 318 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 TMX2Q9Y320 296 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 NOC2LQ9Y3T9 749 aaKnown RBP5.6□□□□□ -1.51
CD44-236ENST00000533222 USP16Q9Y5T5 823 aa5.6□□□□□ -1.51
CD44-236ENST00000533222 ZNF518AQ6AHZ1 1483 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 MAGI2Q86UL8 1455 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 NSD3Q9BZ95 1437 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 PRSS38A1L453 326 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 C16orf96A6NNT2 1141 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 FAM25AB3EWG3 89 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 FAM25CB3EWG5 89 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 FAM25GB3EWG6 89 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 TCP11X1B4DZS4 312 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 F8W8V4 182 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 KIAA0355O15063 1070 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 PPM1DO15297 605 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 SSX5O60225 188 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 CCDC22O60826 627 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 SULT1C4O75897 302 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 DNAJB5O75953 348 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 AGR2O95994 175 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 APOC1P02654 83 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 SLC4A1P02730 911 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 ATP5BP06576 529 aaKnown RBP5.59□□□□□ -1.51
CD44-236ENST00000533222 ANXA6P08133 673 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 POLR2MP0CAP2 368 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 ZNF888P0CJ79 500 aaPredicted RBP5.59□□□□□ -1.51
CD44-236ENST00000533222 POU2F1P14859 743 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 APEX1P27695 318 aaKnown RBP5.59□□□□□ -1.51
CD44-236ENST00000533222 IARSP41252 1262 aaKnown RBP5.59□□□□□ -1.51
CD44-236ENST00000533222 RAD52P43351 418 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 HTR3AP46098 478 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 HOXA1P49639 335 aaPredicted RBP5.59□□□□□ -1.51
CD44-236ENST00000533222 SCNN1GP51170 649 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 STAT5BP51692 787 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 KCNQ1P51787 676 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 SUCLG1P53597 346 aaKnown RBP5.59□□□□□ -1.51
CD44-236ENST00000533222 EPHB1P54762 984 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 MANFP55145 182 aaKnown RBP5.59□□□□□ -1.51
CD44-236ENST00000533222 SCAND1P57086 179 aa5.59□□□□□ -1.51
CD44-236ENST00000533222 ANTXR2P58335 489 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms