RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 USP29Q9HBJ7 922 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 NCKIPSDQ9NZQ3 722 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 SPTY2D1-AS1A0A0U1RR47 76 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 K7ESM1 405 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 RAD51BO15315 384 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 TMCC1O94876 653 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 CD160O95971 181 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 CSF2P04141 144 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 NME1P15531 152 aaKnown RBP14.95□□□□□ -0.02
VPS28-215ENST00000531924 JUNDP17535 347 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 ABL2P42684 1182 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 ZNF143P52747 638 aaPredicted RBP14.95□□□□□ -0.02
VPS28-215ENST00000531924 RHOAP61586 193 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 C1QBPQ07021 282 aaKnown RBP14.95□□□□□ -0.02
VPS28-215ENST00000531924 PTP4A2Q12974 167 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 PTK2BQ14289 1009 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 FGL2Q14314 439 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 FZD2Q14332 565 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 ACAP1Q15027 740 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 ARTNQ5T4W7 220 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 RTL3Q8N8U3 475 aaKnown RBP14.95□□□□□ -0.02
VPS28-215ENST00000531924 DCBLD1Q8N8Z6 715 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 CXorf40AQ8TE69 158 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 BTN2A2Q8WVV5 523 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 FGF11Q92914 225 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 APOLD1Q96LR9 279 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 DEPDC7Q96QD5 511 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 IL12RB2Q99665 862 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 MAGEB5Q9BZ81 275 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 TTYH3Q9C0H2 523 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 DONSONQ9NYP3 566 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 LIMA1Q9UHB6 759 aaKnown RBP14.95□□□□□ -0.02
VPS28-215ENST00000531924 ITM2BQ9Y287 266 aa14.95□□□□□ -0.02
VPS28-215ENST00000531924 TP53BP1Q12888 1972 aaPredicted RBP14.94□□□□□ -0.02
VPS28-215ENST00000531924 ADAMTS20P59510 1910 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 URB1O60287 2271 aaKnown RBP14.94□□□□□ -0.02
VPS28-215ENST00000531924 OPA1O60313 960 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 BRINP1O60477 761 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 NEBLO76041 1014 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 FERP16591 822 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 EIF2S3P41091 472 aaKnown RBP14.94□□□□□ -0.02
VPS28-215ENST00000531924 AIF1P55008 147 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 GSCP56915 257 aaPredicted RBP14.94□□□□□ -0.02
VPS28-215ENST00000531924 YBEYP58557 167 aaPredicted RBP14.94□□□□□ -0.02
VPS28-215ENST00000531924 PARP15Q460N3 678 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 INO80DQ53TQ3 878 aaPredicted RBP14.94□□□□□ -0.02
VPS28-215ENST00000531924 CFAP58Q5T655 872 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 ZCCHC8Q6NZY4 707 aaKnown RBP14.94□□□□□ -0.02
VPS28-215ENST00000531924 CLEC17AQ6ZS10 378 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 VPS36Q86VN1 386 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 PYROXD2Q8N2H3 581 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 PAF1Q8N7H5 531 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 DENND6BQ8NEG7 585 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 ZNF548Q8NEK5 533 aaPredicted RBP14.94□□□□□ -0.02
VPS28-215ENST00000531924 MAPK15Q8TD08 544 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 LMX1AQ8TE12 382 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 ASB12Q8WXK4 309 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 GLMNQ92990 594 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 MCEEQ96PE7 176 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 CNPY3Q9BT09 278 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 CSNK1G3Q9Y6M4 447 aa14.94□□□□□ -0.02
VPS28-215ENST00000531924 CPED1A4D0V7 1026 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 RASA4BC9J798 803 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 FGF10O15520 208 aaPredicted RBP14.93□□□□□ -0.02
VPS28-215ENST00000531924 CCP110O43303 1012 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 AQP9O43315 295 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 RASA4O43374 803 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 TM7SF2O76062 418 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 GP1BAP07359 652 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 MYF5P13349 255 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 RPIAP49247 311 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 SOWAHCQ53LP3 525 aaPredicted RBP14.93□□□□□ -0.02
VPS28-215ENST00000531924 LRRC73Q5JTD7 316 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 PPP1R2P3Q6NXS1 205 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 RBM43Q6ZSC3 357 aaKnown RBP14.93□□□□□ -0.02
VPS28-215ENST00000531924 MON1BQ7L1V2 547 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 FAM181AQ8N9Y4 354 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 IFI44Q8TCB0 444 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 HMCESQ96FZ2 354 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 SLC13A1Q9BZW2 595 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 NAT10Q9H0A0 1025 aaKnown RBP14.93□□□□□ -0.02
VPS28-215ENST00000531924 SPASTQ9UBP0 616 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 GGT7Q9UJ14 662 aa14.93□□□□□ -0.02
VPS28-215ENST00000531924 RIOK3O14730 519 aaKnown RBP14.92□□□□□ -0.02
VPS28-215ENST00000531924 TLX3O43711 291 aaPredicted RBP14.92□□□□□ -0.02
VPS28-215ENST00000531924 MMP20O60882 483 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 TNFAIP3P21580 790 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 ITPKBP27987 946 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 TPI1P60174 286 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 NR0B2Q15466 257 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 CDKN3Q16667 212 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 DEFB133Q30KQ1 61 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 FAXCQ5TGI0 409 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 ACAD10Q6JQN1 1059 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 ERGIC2Q96RQ1 377 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 KLF6Q99612 283 aaPredicted RBP14.92□□□□□ -0.02
VPS28-215ENST00000531924 WRAP53Q9BUR4 548 aaKnown RBP14.92□□□□□ -0.02
VPS28-215ENST00000531924 CAAP1Q9H8G2 361 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 GPR27Q9NS67 375 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 UBA2Q9UBT2 640 aaPredicted RBP14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms