RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 GULP1Q9UBP9 304 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 SRPRBQ9Y5M8 271 aaKnown RBP8.39□□□□□ -1.07
CD44-232ENST00000531118 CLIC4Q9Y696 253 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 CELSR1Q9NYQ6 3014 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 TCAF2A6NFQ2 919 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 F5H5T6 163 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 MEN1O00255 615 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 YY2O15391 372 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 DDAH2O95865 285 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 PRNPP04156 253 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 SETSIPP0DME0 302 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 PRKAR1AP10644 381 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 SRCP12931 536 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 LCP1P13796 627 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 UGT1A3P35503 534 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 IGFALSP35858 605 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 RNF144AP50876 292 aaPredicted RBP8.38□□□□□ -1.07
CD44-232ENST00000531118 THOP1P52888 689 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 KNOP1Q1ED39 458 aaKnown RBP8.38□□□□□ -1.07
CD44-232ENST00000531118 EFHC2Q5JST6 749 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 PHF19Q5T6S3 580 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 TMEM164Q5U3C3 297 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 MACC1Q6ZN28 852 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 SPRED1Q7Z699 444 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 TAC4Q86UU9 113 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 HEATR4Q86WZ0 1026 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 FSTL5Q8N475 847 aaPredicted RBP8.38□□□□□ -1.07
CD44-232ENST00000531118 CHST14Q8NCH0 376 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 TMIEQ8NEW7 156 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 GOLGA5Q8TBA6 731 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 CLEC4CQ8WTT0 213 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 IRGQQ8WZA9 623 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 SLC39A13Q96H72 371 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 PPP1R16AQ96I34 528 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 SLC45A3Q96JT2 553 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 CCDC114Q96M63 670 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 KLF6Q99612 283 aaPredicted RBP8.38□□□□□ -1.07
CD44-232ENST00000531118 HDAC8Q9BY41 377 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 PANK2Q9BZ23 570 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 SLC13A1Q9BZW2 595 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 CDH19Q9H159 772 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 CISHQ9NSE2 258 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 KBTBD4Q9NVX7 518 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 DMAC2Q9NW81 257 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 TLR6Q9Y2C9 796 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 FADS3Q9Y5Q0 445 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 RNF215Q9Y6U7 377 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 HIVEP1P15822 2718 aa8.38□□□□□ -1.07
CD44-232ENST00000531118 NF1P21359 2839 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 APCP25054 2843 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 DIDO1Q9BTC0 2240 aaKnown RBP8.37□□□□□ -1.07
CD44-232ENST00000531118 SPG11Q96JI7 2443 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 WIPF3A6NGB9 483 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 EFCAB7A8K855 629 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 NKX2-8O15522 239 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 RAD1O60671 282 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 PAK4O96013 591 aaPredicted RBP8.37□□□□□ -1.07
CD44-232ENST00000531118 APOEP02649 317 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 TRIM49P0CI25 452 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 TRIM49CP0CI26 452 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 CCL4P13236 92 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 ADRB3P13945 408 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 RECQLP46063 649 aaPredicted RBP8.37□□□□□ -1.07
CD44-232ENST00000531118 RGS7P49802 495 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 GDF10P55107 478 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 CENPCQ03188 943 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 PTK2BQ14289 1009 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 TCEA2Q15560 299 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 ARHGAP44Q17R89 818 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 MAP9Q49MG5 647 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 TTC39BQ5VTQ0 682 aaPredicted RBP8.37□□□□□ -1.07
CD44-232ENST00000531118 CNNM4Q6P4Q7 775 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 C22orf39Q6P5X5 142 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 UNC13DQ70J99 1090 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 ZSCAN30Q86W11 494 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 SLC9A9Q8IVB4 645 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 CACNA2D3Q8IZS8 1091 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 TTC39CQ8N584 583 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 Q8N9G6 341 aaPredicted RBP8.37□□□□□ -1.07
CD44-232ENST00000531118 TEX19Q8NA77 164 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 OR6C4Q8NGE1 309 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 OR52K2Q8NGK3 314 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 OR2A12Q8NGT7 310 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 APOBEC4Q8WW27 367 aaKnown RBP8.37□□□□□ -1.07
CD44-232ENST00000531118 KCTD13Q8WZ19 329 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 ALG14Q96F25 216 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 LENG8Q96PV6 779 aaPredicted RBP8.37□□□□□ -1.07
CD44-232ENST00000531118 LRRC27Q9C0I9 530 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 ETNK1Q9HBU6 452 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 HESX1Q9UBX0 185 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 GGT7Q9UJ14 662 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 GPR34Q9UPC5 381 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 HS3ST2Q9Y278 367 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 DAAM1Q9Y4D1 1078 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 PCDHGA3Q9Y5H0 932 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 DOCK4Q8N1I0 1966 aa8.37□□□□□ -1.07
CD44-232ENST00000531118 K7EM74 188 aa8.36□□□□□ -1.07
CD44-232ENST00000531118 M0QYT0 321 aa8.36□□□□□ -1.07
CD44-232ENST00000531118 PIK3R2O00459 728 aa8.36□□□□□ -1.07
CD44-232ENST00000531118 IKBKBO14920 756 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms