RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CASC4Q6P4E1 433 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 TPGS1Q6ZTW0 290 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 FBF1Q8TES7 1133 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 OSCP1Q8WVF1 389 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 IRF7Q92985 503 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 TADA1Q96BN2 335 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 ZFYVE19Q96K21 471 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 MGME1Q9BQP7 344 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 BCCIPQ9P287 314 aaKnown RBP eCLIP21.47■■□□□ 1.03
VPS28-212ENST00000530836 LGALS13Q9UHV8 139 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 ARNTLO00327 626 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 MT-CYBP00156 380 aaPredicted RBP21.47■■□□□ 1.03
VPS28-212ENST00000530836 PENKP01210 267 aaPredicted RBP21.47■■□□□ 1.03
VPS28-212ENST00000530836 PLK1P53350 603 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 STEAP4Q687X5 459 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 ZNF449Q6P9G9 518 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 CAPN12Q6ZSI9 719 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 PRPF39Q86UA1 669 aaKnown RBP21.47■■□□□ 1.03
VPS28-212ENST00000530836 IPMKQ8NFU5 416 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 FAM76AQ8TAV0 307 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 CFAP36Q96G28 342 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 XPO6Q96QU8 1125 aaKnown RBP21.47■■□□□ 1.03
VPS28-212ENST00000530836 ARNT2Q9HBZ2 717 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 TRPV5Q9NQA5 729 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 DUS2Q9NX74 493 aaKnown RBP21.47■■□□□ 1.03
VPS28-212ENST00000530836 NUP210Q8TEM1 1887 aaPredicted RBP21.46■■□□□ 1.03
VPS28-212ENST00000530836 TCRBV9S1A1TA0A576 114 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 TNFRSF10AO00220 468 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 ZMPSTE24O75844 475 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 POLBP06746 335 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 ALADP13716 330 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 CSKP41240 450 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 PFKPQ01813 784 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 NR1H3Q13133 447 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 RETSATQ6NUM9 610 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 KDELC1Q6UW63 502 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 RANBP10Q6VN20 620 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 UNC5AQ6ZN44 842 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 MPP5Q8N3R9 675 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 ARRDC2Q8TBH0 407 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 PTCD2Q8WV60 388 aaKnown RBP21.46■■□□□ 1.03
VPS28-212ENST00000530836 TLCD1Q96CP7 247 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 ALG14Q96F25 216 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 ASIC4Q96FT7 647 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 MRGPRX2Q96LB1 330 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 LINC00597Q9H2U6 94 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 SPHK2Q9NRA0 654 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 MARK1Q9P0L2 795 aa21.46■■□□□ 1.03
VPS28-212ENST00000530836 TRIOO75962 3097 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 SMIM23A6NLE4 172 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 POLR3GO15318 223 aaPredicted RBP21.45■■□□□ 1.02
VPS28-212ENST00000530836 USP12O75317 370 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 PMPCBO75439 489 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 EPOP01588 193 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 SERPINF2P08697 491 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 PRKCHP24723 683 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 MZF1P28698 734 aaPredicted RBP21.45■■□□□ 1.02
VPS28-212ENST00000530836 CD86P42081 329 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 SLCO1A2P46721 670 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 WNT3AP56704 352 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 SLC20A2Q08357 652 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 FRG1Q14331 258 aaKnown RBP21.45■■□□□ 1.02
VPS28-212ENST00000530836 PDGFRLQ15198 375 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 TNFAIP8L3Q5GJ75 292 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 RALGPS1Q5JS13 557 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 KCTD16Q68DU8 428 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 PGBD5Q8N414 524 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 ARFGAP2Q8N6H7 521 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 EDAQ92838 391 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 SEMA3CQ99985 751 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 FICDQ9BVA6 458 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 NOVA2Q9UNW9 492 aaKnown RBP21.45■■□□□ 1.02
VPS28-212ENST00000530836 WNT6Q9Y6F9 365 aa21.45■■□□□ 1.02
VPS28-212ENST00000530836 MAXP61244 160 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 ARF5P84085 180 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 DSC2Q02487 901 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 NSUN2Q08J23 767 aaKnown RBP eCLIP21.44■■□□□ 1.02
VPS28-212ENST00000530836 NIPAL4Q0D2K0 466 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 SPANXN3Q5MJ09 141 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 TRIM68Q6AZZ1 485 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 TAOK1Q7L7X3 1001 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.44■■□□□ 1.02
VPS28-212ENST00000530836 DNASE1L2Q92874 299 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 TTC17Q96AE7 1141 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 SLC2A11Q9BYW1 496 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 SYBUQ9NX95 663 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 PSMC3IPQ9P2W1 217 aaPredicted RBP21.44■■□□□ 1.02
VPS28-212ENST00000530836 WNT16Q9UBV4 365 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 FAM237BA0A1B0GVD1 139 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 ALDH1A2O94788 518 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 MMP2P08253 660 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 GLDCP23378 1020 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 SKOR1P84550 965 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 EML3Q32P44 896 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 EMC10Q5UCC4 262 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 LEKR1Q6ZMV7 388 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 TMEM135Q86UB9 458 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 ADGRG2Q8IZP9 1017 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 BHMTQ93088 406 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 BBS2Q9BXC9 721 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms