RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 TBC1D22BQ9NU19 505 aa6.19□□□□□ -1.42
PCF11-202ENST00000528336 ALKBH4Q9NXW9 302 aa6.19□□□□□ -1.42
PCF11-202ENST00000528336 GGA3Q9NZ52 723 aa6.19□□□□□ -1.42
PCF11-202ENST00000528336 SLC4A4Q9Y6R1 1079 aa6.19□□□□□ -1.42
PCF11-202ENST00000528336 TTC3P53804 2025 aa6.19□□□□□ -1.42
PCF11-202ENST00000528336 ATP10BO94823 1461 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 FYCO1Q9BQS8 1478 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 STMND1H3BQB6 276 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 CRYABP02511 175 aaKnown RBP6.18□□□□□ -1.42
PCF11-202ENST00000528336 UNGP13051 313 aaPredicted RBP6.18□□□□□ -1.42
PCF11-202ENST00000528336 CLCNKBP51801 687 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 TDGQ13569 410 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 UBAP2Q5T6F2 1119 aaKnown RBP6.18□□□□□ -1.42
PCF11-202ENST00000528336 SPATA1Q5VX52 437 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 RETSATQ6NUM9 610 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 GJB7Q6PEY0 223 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 BBS12Q6ZW61 710 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 CAMK1DQ8IU85 385 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 HDAC7Q8WUI4 952 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 USP13Q92995 863 aaPredicted RBP6.18□□□□□ -1.42
PCF11-202ENST00000528336 ZBTB10Q96DT7 871 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 CD180Q99467 661 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.18□□□□□ -1.42
PCF11-202ENST00000528336 POLDIP3Q9BY77 421 aaKnown RBP6.18□□□□□ -1.42
PCF11-202ENST00000528336 ISCUQ9H1K1 167 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 SIRT3Q9NTG7 399 aaPredicted RBP6.18□□□□□ -1.42
PCF11-202ENST00000528336 GRHL1Q9NZI5 618 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 HSF4Q9ULV5 492 aa6.18□□□□□ -1.42
PCF11-202ENST00000528336 NAP1L2Q9ULW6 460 aaPredicted RBP6.18□□□□□ -1.42
PCF11-202ENST00000528336 ZCCHC11Q5TAX3 1644 aaKnown RBP6.17□□□□□ -1.42
PCF11-202ENST00000528336 HECW1Q76N89 1606 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 VPS8Q8N3P4 1428 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 EPRSP07814 1512 aaKnown RBP6.17□□□□□ -1.42
PCF11-202ENST00000528336 MYMKA6NI61 221 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 BAIAP3O94812 1187 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 MBD4O95243 580 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 HOXC13P31276 330 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 PGM1P36871 562 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 DPP6P42658 865 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 RAD52P43351 418 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 KRT83P78385 493 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 TBL3Q12788 808 aaKnown RBP6.17□□□□□ -1.42
PCF11-202ENST00000528336 PKP1Q13835 747 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 TWIST1Q15672 202 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 SLC18A3Q16572 532 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 NFIL3Q16649 462 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 SLC10A5Q5PT55 438 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 AWAT2Q6E213 333 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 TMEM71Q6P5X7 295 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 CTU1Q7Z7A3 348 aaKnown RBP6.17□□□□□ -1.42
PCF11-202ENST00000528336 KDM1BQ8NB78 822 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 DNAAF1Q8NEP3 725 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 HSPH1Q92598 858 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 CNOT9Q92600 299 aaKnown RBP6.17□□□□□ -1.42
PCF11-202ENST00000528336 SH3KBP1Q96B97 665 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 ZBTB9Q96C00 473 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 GPR63Q9BZJ6 419 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 TMEM160Q9NX00 188 aa6.17□□□□□ -1.42
PCF11-202ENST00000528336 PCF11O94913 1555 aaKnown RBP6.17□□□□□ -1.42
PCF11-202ENST00000528336 CCDC18Q5T9S5 1454 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 WDR7Q9Y4E6 1490 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.16□□□□□ -1.42
PCF11-202ENST00000528336 FAM90A7PA6NKC0 464 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 FAM90A22PA8MWA6 464 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 FAM90A12PA8MX19 464 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 FAM90A23PA8MXZ1 464 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 HSPB6O14558 160 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 RNMTO43148 476 aaKnown RBP6.16□□□□□ -1.42
PCF11-202ENST00000528336 KLKB1P03952 638 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 GLULP15104 373 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 TBXAS1P24557 533 aaPredicted RBP6.16□□□□□ -1.42
PCF11-202ENST00000528336 RFC1P35251 1148 aaPredicted RBP6.16□□□□□ -1.42
PCF11-202ENST00000528336 POLD2P49005 469 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 CCT4P50991 539 aaKnown RBP6.16□□□□□ -1.42
PCF11-202ENST00000528336 P2RX3P56373 397 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 WASHC5Q12768 1159 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 Q5PR19 223 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 TBC1D9BQ66K14 1250 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 PARM1Q6UWI2 310 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 GALNT5Q7Z7M9 940 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 CEP76Q8TAP6 659 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 ATOH1Q92858 354 aaPredicted RBP6.16□□□□□ -1.42
PCF11-202ENST00000528336 WDR77Q9BQA1 342 aaPredicted RBP6.16□□□□□ -1.42
PCF11-202ENST00000528336 CLSTN3Q9BQT9 956 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 PHF7Q9BWX1 381 aaPredicted RBP6.16□□□□□ -1.42
PCF11-202ENST00000528336 LMAN2LQ9H0V9 348 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 SLC32A1Q9H598 525 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 ODF2LQ9ULJ1 636 aa6.16□□□□□ -1.42
PCF11-202ENST00000528336 ABCC10Q5T3U5 1492 aa6.15□□□□□ -1.42
PCF11-202ENST00000528336 C17orf102A2RUQ5 167 aa6.15□□□□□ -1.42
PCF11-202ENST00000528336 GAGE12JA6NER3 117 aa6.15□□□□□ -1.42
PCF11-202ENST00000528336 CD8B2A6NJW9 211 aa6.15□□□□□ -1.42
PCF11-202ENST00000528336 EYA2O00167 538 aa6.15□□□□□ -1.42
PCF11-202ENST00000528336 PER2O15055 1255 aa6.15□□□□□ -1.42
PCF11-202ENST00000528336 SLC25A17O43808 307 aa6.15□□□□□ -1.42
PCF11-202ENST00000528336 PLOD3O60568 738 aa6.15□□□□□ -1.42
PCF11-202ENST00000528336 CD4P01730 458 aa6.15□□□□□ -1.42
PCF11-202ENST00000528336 IFIT1P09914 478 aaKnown RBP6.15□□□□□ -1.42
PCF11-202ENST00000528336 PSMA3P25788 255 aa6.15□□□□□ -1.42
PCF11-202ENST00000528336 YWHAQP27348 245 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms