RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 GPATCH2LQ9NWQ4 482 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 DNAJC28Q9NX36 388 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 UBA2Q9UBT2 640 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-215ENST00000515516 CACNA1BQ00975 2339 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 MAP1BP46821 2468 aaKnown RBP13.85□□□□□ -0.19
TCOF1-215ENST00000515516 SYCE3A1L190 88 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 FAM149AA5PLN7 773 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 TMEM191CA6NGB0 347 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 ARHGAP42A6NI28 874 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 GOLGA6L19H0YKK7 550 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 H3BM21 787 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 DGKAP23743 735 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 ABL2P42684 1182 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 ACADVLP49748 655 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 HNRNPKP61978 463 aaKnown RBP eCLIP13.85□□□□□ -0.19
TCOF1-215ENST00000515516 DAB2P98082 770 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 ZNF211Q13398 564 aaPredicted RBP13.85□□□□□ -0.19
TCOF1-215ENST00000515516 GRM3Q14832 879 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 IQCB1Q15051 598 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 TDRD12Q587J7 1177 aaKnown RBP13.85□□□□□ -0.19
TCOF1-215ENST00000515516 KYAT3Q6YP21 454 aaKnown RBP13.85□□□□□ -0.19
TCOF1-215ENST00000515516 KANSL1Q7Z3B3 1105 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 PROSER1Q86XN7 944 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 DNAAF5Q86Y56 855 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 PDCD7Q8N8D1 485 aaKnown RBP13.85□□□□□ -0.19
TCOF1-215ENST00000515516 ASB12Q8WXK4 309 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 C1QTNF2Q9BXJ5 285 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 KLC2Q9H0B6 622 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 MYO1AQ9UBC5 1043 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 MFHAS1Q9Y4C4 1052 aa13.85□□□□□ -0.19
TCOF1-215ENST00000515516 BZW2Q9Y6E2 419 aaKnown RBP13.85□□□□□ -0.19
TCOF1-215ENST00000515516 TRABD2BA6NFA1 517 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 DDX3XO00571 662 aaKnown RBP eCLIP13.84□□□□□ -0.199e-17■■□□□ 11.8
TCOF1-215ENST00000515516 FFAR2O15552 330 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 SIGLEC6O43699 453 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 TM7SF2O76062 418 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 SKILP12757 684 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 PTMSP20962 102 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 MIPP30301 263 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 SUOXP51687 545 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 ZNF135P52742 658 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-215ENST00000515516 UBASH3AP57075 661 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 FANCCQ00597 558 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 FGL2Q14314 439 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 CYTH1Q15438 398 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 KLHL40Q2TBA0 621 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 PPP6R3Q5H9R7 873 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-215ENST00000515516 FIGNQ5HY92 759 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 RFX8Q6ZV50 586 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 MARCH9Q86YJ5 346 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 PSTKQ8IV42 348 aaKnown RBP13.84□□□□□ -0.19
TCOF1-215ENST00000515516 SLC25A45Q8N413 288 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 PAF1Q8N7H5 531 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 DENND6BQ8NEG7 585 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 MDM1Q8TC05 714 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 FNIP1Q8TF40 1166 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 TSC1Q92574 1164 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 CELF6Q96J87 481 aaKnown RBP13.84□□□□□ -0.19
TCOF1-215ENST00000515516 BMFQ96LC9 184 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 SNRNP25Q9BV90 132 aaKnown RBP13.84□□□□□ -0.19
TCOF1-215ENST00000515516 CPEB1Q9BZB8 566 aaKnown RBP13.84□□□□□ -0.19
TCOF1-215ENST00000515516 LRRC19Q9H756 370 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 ZWILCHQ9H900 591 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 CBX8Q9HC52 389 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 DKK3Q9UBP4 350 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 ITM2BQ9Y287 266 aa13.84□□□□□ -0.19
TCOF1-215ENST00000515516 KMT2BQ9UMN6 2715 aaPredicted RBP13.83□□□□□ -0.2
TCOF1-215ENST00000515516 POM121BA6NF01 834 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 DFFAO00273 331 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 TRIM38O00635 465 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 RAD51BO15315 384 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 PALMO75781 387 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 PIAS2O75928 621 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 TIMP2P16035 220 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 PAPOLAP51003 745 aaKnown RBP13.83□□□□□ -0.2
TCOF1-215ENST00000515516 THOP1P52888 689 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 E2F1Q01094 437 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 ELP6Q0PNE2 266 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 PDE1CQ14123 709 aaPredicted RBP13.83□□□□□ -0.2
TCOF1-215ENST00000515516 PTK2BQ14289 1009 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 ACAP1Q15027 740 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 ZNF542PQ5EBM4 170 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 ERAP2Q6P179 960 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 LUZP1Q86V48 1076 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 PARGQ86W56 976 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 SLC22A18ASQ8N1D0 253 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 NETO2Q8NC67 525 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 OR4C6Q8NH72 309 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 HCAR2Q8TDS4 363 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 IQCDQ96DY2 449 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 EXOC2Q96KP1 924 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 KCTD15Q96SI1 283 aaPredicted RBP13.83□□□□□ -0.2
TCOF1-215ENST00000515516 FUCA2Q9BTY2 467 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 DUSP23Q9BVJ7 150 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 SLC39A8Q9C0K1 460 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 SUV39H2Q9H5I1 410 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 SP110Q9HB58 689 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 UCKL1Q9NWZ5 548 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 NLGN3Q9NZ94 848 aa13.83□□□□□ -0.2
TCOF1-215ENST00000515516 GGT7Q9UJ14 662 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms