RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TPD52P55327 224 aaPredicted RBP12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 ESCO1Q5FWF5 840 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 CLVS2Q5SYC1 327 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 OTUD3Q5T2D3 398 aaPredicted RBP12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 ERAP2Q6P179 960 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 COLGALT2Q8IYK4 626 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 SDCCAG3Q96C92 435 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 RAB6BQ9NRW1 208 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 NRXN3Q9Y4C0 1643 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 TYW5A2RUC4 315 aaKnown RBP12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 PLK4O00444 970 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 TPP1O14773 563 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 ABCB7O75027 752 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 PRKD3O94806 890 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 BMP2P12643 396 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 IL7RP16871 459 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 EIF6P56537 245 aaKnown RBP12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 TFAMQ00059 246 aaKnown RBP12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 RHAGQ02094 409 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 MAMLD1Q13495 774 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 GEN1Q17RS7 908 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 SLC16A12Q6ZSM3 486 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 ERMP1Q7Z2K6 904 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 CAND1Q86VP6 1230 aaKnown RBP12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 DHFR2Q86XF0 187 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 DDIASQ8IXT1 998 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 UNC5BQ8IZJ1 945 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 SLC35B2Q8TB61 432 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 MCRS1Q96EZ8 462 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 CBWD1Q9BRT8 395 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 SLA2Q9H6Q3 261 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 SYBUQ9NX95 663 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 FZD1Q9UP38 647 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 TOPAZ1Q8N9V7 1692 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 TP53P04637 393 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 KRT7P08729 469 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 MPSTP25325 297 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 DSG3P32926 999 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 CCR10P46092 362 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 BST2Q10589 180 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 ZNF720Q7Z2F6 126 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 R3HCC1LQ7Z5L2 792 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 RHOXF1Q8NHV9 184 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 FKBP10Q96AY3 582 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 NXNL1Q96CM4 212 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 C1QTNF7Q9BXJ2 289 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 IPPQ9Y573 584 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 RNF103O00237 685 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 PDHXO00330 501 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 CHMP2AO43633 222 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 SSX4O60224 188 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 CHRNGP07510 517 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 UNGP13051 313 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 ACTR2P61160 394 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 TRIM28Q13263 835 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 ZNF544Q6NX49 715 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 BBS12Q6ZW61 710 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 AMIGO1Q86WK6 493 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 KCTD4Q8WVF5 259 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 C9orf16Q9BUW7 83 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 MRPL47Q9HD33 250 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 CHST12Q9NRB3 414 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 DMAC2Q9NW81 257 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 EGFL7Q9UHF1 273 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 PCDHGA10Q9Y5H3 936 aa12.16□□□□□ -0.46
LIMCH1-213ENST00000511496 PSKH1P11801 424 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 FASP25445 335 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 ST13P50502 369 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 GLRA4Q5JXX5 417 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 PMF1Q6P1K2 205 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 RSBN1LQ6PCB5 846 aaPredicted RBP12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 ATXN7L3BQ96GX2 97 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 NECTIN4Q96NY8 510 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 ZNF577Q9BSK1 485 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 SMPD3Q9NY59 655 aaPredicted RBP12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 KCND2Q9NZV8 630 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 ATP6V1HQ9UI12 483 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 TLK1Q9UKI8 766 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 RGPD8O14715 1765 aaPredicted RBP12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 TCAF2A6NFQ2 919 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 EIF3DO15371 548 aaKnown RBP eCLIP12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 GLRA3O75311 464 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 GAP43P17677 238 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 EIF2DP41214 584 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 SMARCB1Q12824 385 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 CTF1Q16619 201 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 ADPRMQ3LIE5 342 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 TBRG1Q3YBR2 411 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 CYBRD1Q53TN4 286 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 BRMS1LQ5PSV4 323 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 NAPRTQ6XQN6 538 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 GDPD3Q7L5L3 318 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 TRMT1LQ7Z2T5 733 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 TFAP2DQ7Z6R9 452 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 SPPL2CQ8IUH8 684 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 SHCBP1Q8NEM2 672 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 IL17RDQ8NFM7 739 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 RPL10LQ96L21 214 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 DSN1Q9H410 356 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 CD320Q9NPF0 282 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms