RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 FBXO32Q969P5 355 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 PAWRQ96IZ0 340 aaKnown RBP11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 ZNF778Q96MU6 729 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 SORT1Q99523 831 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 SERPINI1Q99574 410 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 RBBP8Q99708 897 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 CENPKQ9BS16 269 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 RTKNQ9BST9 563 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 VN1R3Q9BXE9 311 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 KLHL4Q9C0H6 718 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 TLR6Q9Y2C9 796 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 ATP11BQ9Y2G3 1177 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 PDE4DIPQ5VU43 2346 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 FAM92AA1XBS5 289 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 E9PAM4 449 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 ZNF195O14628 629 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 PSMD3O43242 534 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 USP1O94782 785 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 SNUPNO95149 360 aaKnown RBP11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 ATF6P18850 670 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 HOXC13P31276 330 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 TUBP50607 506 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 LIMK2P53671 638 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 PSMD5Q16401 504 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 C11orf91Q3C1V1 193 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 RASIP1Q5U651 963 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 CWF19L1Q69YN2 538 aaKnown RBP11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 EPGNQ6UW88 154 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 ANKS3Q6ZW76 656 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 PDSS2Q86YH6 399 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 TMEM126BQ8IUX1 230 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 ARHGAP12Q8IWW6 846 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 ST13P4Q8IZP2 240 aaPredicted RBP11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 ZSCAN18Q8TBC5 510 aaPredicted RBP11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 SPPL2BQ8TCT7 592 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 GIPC2Q8TF65 315 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 SLC39A13Q96H72 371 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 VAT1Q99536 393 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 TMEM175Q9BSA9 504 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 CDH19Q9H159 772 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 MRGBPQ9NV56 204 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 IL37Q9NZH6 218 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 UBP1Q9NZI7 540 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 NDUFA13Q9P0J0 144 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 TMEM216Q9P0N5 145 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 TRHDEQ9UKU6 1024 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 VANGL2Q9ULK5 521 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 PRPF19Q9UMS4 504 aaKnown RBP11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 ANKRD6Q9Y2G4 727 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 RPS6KL1Q9Y6S9 549 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 CHD7Q9P2D1 2997 aa11.16□□□□□ -0.62
SH3RF1-203ENST00000508685 COL4A6Q14031 1691 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 ENO4A6NNW6 628 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 SLCO1B7G3V0H7 640 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 CASQ2O14958 399 aaPredicted RBP11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 BUD23O43709 281 aaKnown RBP11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 TRIM13O60858 407 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 LYPLA1O75608 230 aaPredicted RBP11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 JCHAINP01591 159 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 THRAP10827 490 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 NFKB1P19838 968 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 POLD2P49005 469 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 SLC25A3Q00325 362 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 ELAVL2Q12926 359 aaKnown RBP11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 CDC16Q13042 620 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 DYNC1I2Q13409 638 aaKnown RBP11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 MED21Q13503 144 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 ITPRIPL1Q6GPH6 555 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 FAM117BQ6P1L5 589 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 MSANTD2Q6P1R3 559 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 TMEM135Q86UB9 458 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 KBTBD2Q8IY47 623 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 FBXW8Q8N3Y1 598 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 FBXO22Q8NEZ5 403 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 OR52K1Q8NGK4 314 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 USP33Q8TEY7 942 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 CLPTM1LQ96KA5 538 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 BTBD9Q96Q07 612 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 HTATIP2Q9BUP3 242 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 GBA3Q9H227 469 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 C11orf49Q9H6J7 331 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 SNX15Q9NRS6 342 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 SYBUQ9NX95 663 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 SLC17A6Q9P2U8 582 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 CDH22Q9UJ99 828 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 TBX21Q9UL17 535 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 MAGED2Q9UNF1 606 aaPredicted RBP11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 SLC4A7Q9Y6M7 1214 aa11.15□□□□□ -0.62
SH3RF1-203ENST00000508685 GOLGA8QA0A0J9YX86 632 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 GOLGA8OA6NCC3 632 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 EIF4E1BA6NMX2 242 aaKnown RBP11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 GOLGA8NF8WBI6 632 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 FGF10O15520 208 aaPredicted RBP11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 HSPA4LO95757 839 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 AP2A1O95782 977 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 HMBSP08397 361 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 HAPLN1P10915 354 aaPredicted RBP11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 COX4I1P13073 169 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms