RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 SETMARQ53H47 684 aaPredicted RBP16.91■□□□□ 0.3
SNCA-209ENST00000506244 PARS2Q7L3T8 475 aaKnown RBP16.91■□□□□ 0.3
SNCA-209ENST00000506244 PRPF39Q86UA1 669 aaKnown RBP16.91■□□□□ 0.3
SNCA-209ENST00000506244 TPCN2Q8NHX9 752 aa16.91■□□□□ 0.3
SNCA-209ENST00000506244 SKA1Q96BD8 255 aa16.91■□□□□ 0.3
SNCA-209ENST00000506244 RNF157Q96PX1 679 aa16.91■□□□□ 0.3
SNCA-209ENST00000506244 PSKH2Q96QS6 385 aa16.91■□□□□ 0.3
SNCA-209ENST00000506244 ATP13A3Q9H7F0 1226 aa16.91■□□□□ 0.3
SNCA-209ENST00000506244 TMEM9BQ9NQ34 198 aa16.91■□□□□ 0.3
SNCA-209ENST00000506244 DKK3Q9UBP4 350 aa16.91■□□□□ 0.3
SNCA-209ENST00000506244 DMTF1Q9Y222 760 aa16.91■□□□□ 0.3
SNCA-209ENST00000506244 REXO2Q9Y3B8 237 aaKnown RBP16.91■□□□□ 0.3
SNCA-209ENST00000506244 GOLGA6L3A6NEY3 463 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 C16orf96A6NNT2 1141 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 APOL1O14791 398 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 LATO43561 262 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 ENGP17813 658 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 SERPINA4P29622 427 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 GARSP41250 739 aaKnown RBP16.9■□□□□ 0.3
SNCA-209ENST00000506244 SUOXP51687 545 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 PPP2CBP62714 309 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 RACK1P63244 317 aaKnown RBP16.9■□□□□ 0.3
SNCA-209ENST00000506244 PPP2CAP67775 309 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 NSUN2Q08J23 767 aaKnown RBP eCLIP16.9■□□□□ 0.3
SNCA-209ENST00000506244 RSPO4Q2I0M5 234 aaPredicted RBP16.9■□□□□ 0.3
SNCA-209ENST00000506244 SLC45A4Q5BKX6 768 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 KIAA1161Q6NSJ0 714 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 IL27RAQ6UWB1 636 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 ADAT2Q7Z6V5 191 aaKnown RBP16.9■□□□□ 0.3
SNCA-209ENST00000506244 NETO2Q8NC67 525 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 TSEN2Q8NCE0 465 aaKnown RBP16.9■□□□□ 0.3
SNCA-209ENST00000506244 HCAR2Q8TDS4 363 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 RBM41Q96IZ5 413 aaKnown RBP16.9■□□□□ 0.3
SNCA-209ENST00000506244 ZNF641Q96N77 438 aaPredicted RBP16.9■□□□□ 0.3
SNCA-209ENST00000506244 KLHL32Q96NJ5 620 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 RTKNQ9BST9 563 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 GRPEL1Q9HAV7 217 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 TM9SF3Q9HD45 589 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 TFR2Q9UP52 801 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 HYOU1Q9Y4L1 999 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 CFAP54Q96N23 3096 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 PI4KAP42356 2102 aa16.9■□□□□ 0.3
SNCA-209ENST00000506244 CEP250Q9BV73 2442 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 WDR87Q6ZQQ6 2873 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 RCCD1A6NED2 376 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 C10orf142B7Z368 130 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 ARHGAP33O14559 1287 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 SLC30A4O14863 429 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 ARHGAP6O43182 974 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 RNGTTO60942 597 aaKnown RBP16.89■□□□□ 0.29
SNCA-209ENST00000506244 NEBLO76041 1014 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 PCDH8O95206 1070 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 XPAP23025 273 aaPredicted RBP16.89■□□□□ 0.29
SNCA-209ENST00000506244 GKP32189 559 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 MMP13P45452 471 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 ID4P47928 161 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 TAS2R38P59533 333 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 TFDP2Q14188 446 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 PUM1Q14671 1186 aaKnown RBP eCLIP16.89■□□□□ 0.29
SNCA-209ENST00000506244 RALGPS1Q5JS13 557 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 STPG1Q5TH74 334 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 MARC1Q5VT66 337 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 SLC9A4Q6AI14 798 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 NAPEPLDQ6IQ20 393 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 BRAT1Q6PJG6 821 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 SRLQ86TD4 932 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 HORMAD1Q86X24 394 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 TP53INP2Q8IXH6 220 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 KATNAL2Q8IYT4 538 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 SYCE1Q8N0S2 351 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 PQLC3Q8N755 202 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 C1orf216Q8TAB5 229 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 FATE1Q969F0 183 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 DESI2Q9BSY9 194 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 TSGA10Q9BZW7 698 aa16.89■□□□□ 0.29
SNCA-209ENST00000506244 CACNA1EQ15878 2313 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 PCDH15Q96QU1 1955 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.88■□□□□ 0.29
SNCA-209ENST00000506244 TSPAN11A1L157 253 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 C3orf70A6NLC5 250 aaPredicted RBP16.88■□□□□ 0.29
SNCA-209ENST00000506244 NEMP1O14524 444 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 TSPAN6O43657 245 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 GDF9O60383 454 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 CER1O95813 267 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 RPS21P63220 83 aaKnown RBP16.88■□□□□ 0.29
SNCA-209ENST00000506244 BCL2L1Q07817 233 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 SLC10A7Q0GE19 358 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 ELP6Q0PNE2 266 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 GRIK2Q13002 908 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 HNRNPDQ14103 355 aaKnown RBP16.88■□□□□ 0.29
SNCA-209ENST00000506244 BZW1Q7L1Q6 419 aaKnown RBP16.88■□□□□ 0.29
SNCA-209ENST00000506244 RFX6Q8HWS3 928 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 PAF1Q8N7H5 531 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 KIAA1524Q8TCG1 905 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 RNF25Q96BH1 459 aaPredicted RBP16.88■□□□□ 0.29
SNCA-209ENST00000506244 HDAC11Q96DB2 347 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 SERAC1Q96JX3 654 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 TSGA13Q96PP4 275 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 MGME1Q9BQP7 344 aa16.88■□□□□ 0.29
SNCA-209ENST00000506244 GTPBP2Q9BX10 602 aaKnown RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms