RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 GRHL1Q9NZI5 618 aa7.3□□□□□ -1.24
NUP54-204ENST00000506098 ASIC3Q9UHC3 531 aa7.3□□□□□ -1.24
NUP54-204ENST00000506098 RSPH14Q9UHP6 348 aa7.3□□□□□ -1.24
NUP54-204ENST00000506098 TPX2Q9ULW0 747 aaKnown RBP7.3□□□□□ -1.24
NUP54-204ENST00000506098 PLA2G4CQ9UP65 541 aa7.3□□□□□ -1.24
NUP54-204ENST00000506098 SLC8A2Q9UPR5 921 aa7.3□□□□□ -1.24
NUP54-204ENST00000506098 AAR2Q9Y312 384 aaKnown RBP7.3□□□□□ -1.24
NUP54-204ENST00000506098 FCF1Q9Y324 198 aaKnown RBP7.3□□□□□ -1.24
NUP54-204ENST00000506098 TDRD6O60522 2096 aaKnown RBP7.29□□□□□ -1.24
NUP54-204ENST00000506098 EDDM13A0A1B0GTR0 161 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.29□□□□□ -1.24
NUP54-204ENST00000506098 KRBA1A5PL33 1030 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 GOLGA6CA6NDK9 693 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 GOLGA6BA6NDN3 693 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 TTC34A8MYJ7 566 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 ALOX15BO15296 676 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 INSIG1O15503 277 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 NEBLO76041 1014 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 POP4O95707 220 aaKnown RBP7.29□□□□□ -1.24
NUP54-204ENST00000506098 AP2A1O95782 977 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 IGSF6O95976 241 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 MT-CYBP00156 380 aaPredicted RBP7.29□□□□□ -1.24
NUP54-204ENST00000506098 EGFP01133 1207 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 EPOP01588 193 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 TUBBP07437 444 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 SERPINF2P08697 491 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 GOLGA6DP0CG33 693 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 ADRA1AP35348 466 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 MAPK8P45983 427 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 ITGA8P53708 1063 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 MAXP61244 160 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 RHOAP61586 193 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 ST8SIA6P61647 398 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 AP1S1P61966 158 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 SKOR1P84550 965 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 DSC2Q02487 901 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 GRSF1Q12849 480 aaKnown RBP eCLIP7.29□□□□□ -1.24
NUP54-204ENST00000506098 CUL1Q13616 776 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 PRPSAP1Q14558 356 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 GRM3Q14832 879 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 MORF4L2Q15014 288 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 TRADDQ15628 312 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 HNRNPA1L2Q32P51 320 aaKnown RBP7.29□□□□□ -1.24
NUP54-204ENST00000506098 HSF5Q4G112 596 aaPredicted RBP7.29□□□□□ -1.24
NUP54-204ENST00000506098 CARD16Q5EG05 197 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 IZUMO3Q5VZ72 239 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 EGFLAMQ63HQ2 1017 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 KDELC1Q6UW63 502 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 ZDHHC24Q6UX98 284 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 ZNF852Q6ZMS4 543 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 TPRG1Q6ZUI0 275 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 ABCA7Q8IZY2 2146 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 GJD3Q8N144 294 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 SYNPOQ8N3V7 929 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 ZNF513Q8N8E2 541 aaPredicted RBP7.29□□□□□ -1.24
NUP54-204ENST00000506098 MCUQ8NE86 351 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 OR2A12Q8NGT7 310 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 SPATA22Q8NHS9 363 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 SORCS1Q8WY21 1168 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.29□□□□□ -1.24
NUP54-204ENST00000506098 OXNAD1Q96HP4 312 aaPredicted RBP7.29□□□□□ -1.24
NUP54-204ENST00000506098 SHDQ96IW2 340 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 LRIG1Q96JA1 1093 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 GDAP1L1Q96MZ0 367 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 TUBGCP5Q96RT8 1024 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 RBM15Q96T37 977 aaKnown RBP eCLIP7.29□□□□□ -1.24
NUP54-204ENST00000506098 SEMA3CQ99985 751 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 MLPHQ9BV36 600 aaPredicted RBP7.29□□□□□ -1.24
NUP54-204ENST00000506098 FRMD8Q9BZ67 464 aaPredicted RBP7.29□□□□□ -1.24
NUP54-204ENST00000506098 FOXP3Q9BZS1 431 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 DPH5Q9H2P9 285 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 ARNT2Q9HBZ2 717 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 CD320Q9NPF0 282 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 SCUBE2Q9NQ36 999 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 ZDHHC18Q9NUE0 388 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 GOLGA6AQ9NYA3 693 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 SUN2Q9UH99 717 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 FAM153AQ9UHL3 310 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 RAB21Q9UL25 225 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 SHOC2Q9UQ13 582 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 SNX24Q9Y343 169 aa7.29□□□□□ -1.24
NUP54-204ENST00000506098 ARIH1Q9Y4X5 557 aaPredicted RBP7.29□□□□□ -1.24
NUP54-204ENST00000506098 LOC285095A0A1B0GVY8 99 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 TCRBV7S3A2A0A539 114 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 KANSL1LA0AUZ9 987 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 KLHL33A6NCF5 533 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 ANTXRLA6NF34 631 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 HMGB1P1B2RPK0 211 aaPredicted RBP7.28□□□□□ -1.24
NUP54-204ENST00000506098 AP3B1O00203 1094 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 TRAFD1O14545 582 aaPredicted RBP7.28□□□□□ -1.24
NUP54-204ENST00000506098 HTRA2O43464 458 aaPredicted RBP7.28□□□□□ -1.24
NUP54-204ENST00000506098 FZD6O60353 706 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 SOCS5O75159 536 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 PPFIA2O75334 1257 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 PRLP01236 227 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 APRTP07741 180 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 CHRNB1P11230 501 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 MLNP12872 115 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 MCM3P25205 808 aa7.28□□□□□ -1.24
NUP54-204ENST00000506098 ECHS1P30084 290 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms