RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 APBA2Q99767 749 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 EIF2AQ9BY44 585 aaKnown RBP9.79□□□□□ -0.84
SYNE1-230ENST00000495090 RHOBTB2Q9BYZ6 727 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 CDT1Q9H211 546 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 RPAP3Q9H6T3 665 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-230ENST00000495090 GPN2Q9H9Y4 310 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-230ENST00000495090 MAGEE1Q9HCI5 957 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 TRPC7Q9HCX4 862 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 PIH1D1Q9NWS0 290 aaKnown RBP9.79□□□□□ -0.84
SYNE1-230ENST00000495090 SCHIP1Q9P0W5 487 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-230ENST00000495090 DOLKQ9UPQ8 538 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 RAD54BQ9Y620 910 aa9.79□□□□□ -0.84
SYNE1-230ENST00000495090 IGKV6-21A0A0C4DH24 114 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 ZNF839A8K0R7 811 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 KPNA4O00629 521 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 MRASO14807 208 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 NRP2O60462 931 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 GNAO1P09471 354 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 SLC35E2BP0CK96 405 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 GOT1P17174 413 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 RGS7P49802 495 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 KPNA2P52292 529 aaKnown RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 GALNT1Q10472 559 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 RALGDSQ12967 914 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 BNIP2Q12982 314 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 NR1D2Q14995 579 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 PAFAH1B3Q15102 231 aaKnown RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 KCTD11Q693B1 232 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 LCN8Q6JVE9 175 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 OGFOD2Q6N063 350 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 XKR5Q6UX68 686 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 TMEM26Q6ZUK4 368 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 ZC3HC1Q86WB0 502 aaKnown RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 OR52K1Q8NGK4 314 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 OR13F1Q8NGS4 319 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 RAB2BQ8WUD1 216 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 ATG4CQ96DT6 458 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 CENPNQ96H22 339 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 HPDLQ96IR7 371 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 POLR1BQ9H9Y6 1135 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 TRNAU1APQ9NX07 287 aaKnown RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 ABCD2Q9UBJ2 740 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 TCAF1Q9Y4C2 921 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 HES2Q9Y543 173 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 TRIM17Q9Y577 477 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 SNX9Q9Y5X1 595 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 GPC6Q9Y625 555 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 MGAMO43451 1857 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 LACTBL1A8MY62 500 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 UBDO15205 165 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 DYNC1LI2O43237 492 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 XPOTO43592 962 aaKnown RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 CNOT3O75175 753 aaKnown RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 HSD17B1P14061 328 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 TFE3P19532 575 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 CD247P20963 164 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 IL10P22301 178 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 FASP25445 335 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 CAPGP40121 348 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 GRIA3P42263 894 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 RPL34P49207 117 aaKnown RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 CCT8P50990 548 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 STAT5BP51692 787 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 BNIP3Q12983 259 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 SEPT6Q14141 434 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 GRM3Q14832 879 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 STXBP2Q15833 593 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 KYAT1Q16773 422 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 UGP2Q16851 508 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 MAP7D1Q3KQU3 841 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 AGKQ53H12 422 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 CCNYL2Q5T2Q4 361 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 FAM182BQ5T319 152 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 JADE1Q6IE81 842 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 SNRNP48Q6IEG0 339 aaKnown RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 CYP2R1Q6VVX0 501 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 KCTD8Q6ZWB6 473 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 USP51Q70EK9 711 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 CENPLQ8N0S6 344 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 PCYOX1LQ8NBM8 494 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 LEMD2Q8NC56 503 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 EFHD2Q96C19 240 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 SCYL1Q96KG9 808 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 ZNF641Q96N77 438 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 GPR78Q96P69 363 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 HOPXQ9BPY8 73 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 PSD2Q9BQI7 771 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 MROQ9BYG7 248 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 MRPL46Q9H2W6 279 aaKnown RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 MUC13Q9H3R2 512 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 XPR1Q9UBH6 696 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 SLC39A10Q9ULF5 831 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 FZD10Q9ULW2 581 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 ADAMTS5Q9UNA0 930 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 RUVBL2Q9Y230 463 aaKnown RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 MTF2Q9Y483 593 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-230ENST00000495090 MFHAS1Q9Y4C4 1052 aa9.78□□□□□ -0.84
SYNE1-230ENST00000495090 LOC285556D6RIA3 1793 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 RBM47A0AV96 593 aaKnown RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms