RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 FNTAP49354 379 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 VPS41P49754 854 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 VASPP50552 380 aaPredicted RBP17.42■□□□□ 0.38
LIME1-208ENST00000493265 CCNHP51946 323 aaPredicted RBP17.42■□□□□ 0.38
LIME1-208ENST00000493265 TERF1P54274 439 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 LMNB2Q03252 620 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 ENPP2Q13822 863 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 C9orf64Q5T6V5 341 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 SRLQ86TD4 932 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 MNS1Q8NEH6 495 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 OR2A12Q8NGT7 310 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 CLDN23Q96B33 292 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 SPATA13Q96N96 652 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 VAT1Q99536 393 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 GABRG3Q99928 467 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 MGME1Q9BQP7 344 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 GLOD4Q9HC38 313 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 C2orf42Q9NWW7 574 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 AMACRQ9UHK6 382 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 TRHDEQ9UKU6 1024 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 ATP8A1Q9Y2Q0 1164 aa17.42■□□□□ 0.38
LIME1-208ENST00000493265 FARP1Q9Y4F1 1045 aaPredicted RBP17.42■□□□□ 0.38
LIME1-208ENST00000493265 TARSL2A2RTX5 802 aaKnown RBP17.41■□□□□ 0.38
LIME1-208ENST00000493265 CTAGE15A4D2H0 777 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 C5orf60A6NFR6 353 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 LAMTOR5O43504 91 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 ATG13O75143 517 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 ZNF189O75820 626 aaPredicted RBP17.41■□□□□ 0.38
LIME1-208ENST00000493265 ECEL1O95672 775 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 KRT14P02533 472 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 CTAGE8P0CG41 777 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 CD68P34810 354 aaPredicted RBP17.41■□□□□ 0.38
LIME1-208ENST00000493265 HSPA9P38646 679 aaKnown RBP17.41■□□□□ 0.38
LIME1-208ENST00000493265 MAGEA9P43362 315 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 DR1Q01658 176 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 NIPAL4Q0D2K0 466 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 PPP1R7Q15435 360 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 MYLK3Q32MK0 819 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 POM121L1PQ3SYA9 428 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 HSF5Q4G112 596 aaPredicted RBP17.41■□□□□ 0.38
LIME1-208ENST00000493265 FAXCQ5TGI0 409 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 ITPRIPL1Q6GPH6 555 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 TMEM92Q6UXU6 159 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 CTAGE6Q86UF2 777 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 CTAGE4Q8IX94 777 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 PAF1Q8N7H5 531 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 SUMF1Q8NBK3 374 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 GRK7Q8WTQ7 553 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 OR8D1Q8WZ84 308 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 RBM15Q96T37 977 aaKnown RBP eCLIP17.41■□□□□ 0.38
LIME1-208ENST00000493265 SLC6A17Q9H1V8 727 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 CHRDQ9H2X0 955 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 NOD2Q9HC29 1040 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 UBP1Q9NZI7 540 aa17.41■□□□□ 0.38
LIME1-208ENST00000493265 A0A1W2PQF6 199 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 TCRBV21S2A2A0A5A6 115 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 CHURC1-FNTBB4DL54 471 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 OPHN1O60890 802 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 GCATO75600 419 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 PIGNO95427 931 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 GAS8O95995 478 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 PSMB4P28070 264 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 RPL22P35268 128 aaKnown RBP17.4■□□□□ 0.38
LIME1-208ENST00000493265 CD86P42081 329 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 RPS9P46781 194 aaKnown RBP17.4■□□□□ 0.38
LIME1-208ENST00000493265 PSMD8P48556 350 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 CSTF1Q05048 431 aaKnown RBP17.4■□□□□ 0.38
LIME1-208ENST00000493265 RAD51Q06609 339 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 MTAPQ13126 283 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 ARSIQ5FYB1 569 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 ZNF572Q7Z3I7 529 aaPredicted RBP17.4■□□□□ 0.38
LIME1-208ENST00000493265 MMAAQ8IVH4 418 aaKnown RBP17.4■□□□□ 0.38
LIME1-208ENST00000493265 CEP112Q8N8E3 955 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 SPATA22Q8NHS9 363 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 NUDCD1Q96RS6 583 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 HEPHQ9BQS7 1158 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 IL36AQ9UHA7 158 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 FEZ2Q9UHY8 353 aaPredicted RBP17.4■□□□□ 0.38
LIME1-208ENST00000493265 GPR179Q6PRD1 2367 aa17.4■□□□□ 0.38
LIME1-208ENST00000493265 TTI1O43156 1089 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 LEFTY1O75610 366 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 METTL18O95568 372 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 POP4O95707 220 aaKnown RBP17.39■□□□□ 0.37
LIME1-208ENST00000493265 IL1BP01584 269 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 PTGIRP43119 386 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 NSUN2Q08J23 767 aaKnown RBP eCLIP17.39■□□□□ 0.37
LIME1-208ENST00000493265 CAMK2GQ13555 558 aaPredicted RBP17.39■□□□□ 0.37
LIME1-208ENST00000493265 ELAVL3Q14576 367 aaKnown RBP17.39■□□□□ 0.37
LIME1-208ENST00000493265 PUM1Q14671 1186 aaKnown RBP eCLIP17.39■□□□□ 0.37
LIME1-208ENST00000493265 CRY1Q16526 586 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 PCSK7Q16549 785 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 P3H1Q32P28 736 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 SYCP2LQ5T4T6 812 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 SYT13Q7L8C5 426 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 KDELC2Q7Z4H8 507 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 CAMK1DQ8IU85 385 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 PGBD3Q8N328 593 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 ARRDC2Q8TBH0 407 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 PDCD6IPQ8WUM4 868 aaKnown RBP17.39■□□□□ 0.37
LIME1-208ENST00000493265 HMGB4Q8WW32 186 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms