RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 DPYSQ14117 519 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 TMEM259Q4ZIN3 620 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 GLRX5Q86SX6 157 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 VSTM4Q8IW00 320 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 LZTR1Q8N653 840 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 TMEM145Q8NBT3 493 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 NETO2Q8NC67 525 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 OR8K1Q8NGG5 319 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 BAHD1Q8TBE0 780 aaPredicted RBP15.3■□□□□ 0.04
USP39-217ENST00000491659 ZNF564Q8TBZ8 553 aaPredicted RBP15.3■□□□□ 0.04
USP39-217ENST00000491659 TEKT4Q8WW24 435 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 KLHDC7BQ96G42 594 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 BTBD6Q96KE9 485 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 EXOC2Q96KP1 924 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 DNAJC7Q99615 494 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 FZD3Q9NPG1 666 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 CWC15Q9P013 229 aaKnown RBP15.3■□□□□ 0.04
USP39-217ENST00000491659 CTTNBP2NLQ9P2B4 639 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 LHX3Q9UBR4 397 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 ZFR2Q9UPR6 939 aaKnown RBP15.3■□□□□ 0.04
USP39-217ENST00000491659 APOBEC2Q9Y235 224 aaKnown RBP15.3■□□□□ 0.04
USP39-217ENST00000491659 CA5BQ9Y2D0 317 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 J3KR12 359 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 ITGAVP06756 1048 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 THEGLP0DJG4 465 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 RARAP10276 462 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 TCF4P15884 667 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 XPAP23025 273 aaPredicted RBP15.29■□□□□ 0.04
USP39-217ENST00000491659 IL1R2P27930 398 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 EPHA8P29322 1005 aaPredicted RBP15.29■□□□□ 0.04
USP39-217ENST00000491659 ABL2P42684 1182 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 SSR1P43307 286 aaKnown RBP15.29■□□□□ 0.04
USP39-217ENST00000491659 GRM3Q14832 879 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 CYTH1Q15438 398 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 SLC18A3Q16572 532 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 PRAMEF14Q5SWL7 426 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 AFMIDQ63HM1 303 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 NPWQ8N729 165 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 FAM174AQ8TBP5 190 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 CTNNBL1Q8WYA6 563 aaPredicted RBP15.29■□□□□ 0.04
USP39-217ENST00000491659 CINPQ9BW66 212 aaPredicted RBP15.29■□□□□ 0.04
USP39-217ENST00000491659 SCNM1Q9BWG6 230 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 SLC17A9Q9BYT1 436 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 CPEB1Q9BZB8 566 aaKnown RBP15.29■□□□□ 0.04
USP39-217ENST00000491659 ABHD10Q9NUJ1 306 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 NENFQ9UMX5 172 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 BTBD3Q9Y2F9 522 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 MFHAS1Q9Y4C4 1052 aa15.29■□□□□ 0.04
USP39-217ENST00000491659 SSU72P8A0A1W2PR75 194 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 A6NNZ2 444 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 HYAL3O43820 417 aaPredicted RBP15.28■□□□□ 0.04
USP39-217ENST00000491659 AKR1B10O60218 316 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 MFAP3LO75121 409 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 PALMO75781 387 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 H2AFZP0C0S5 128 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 SPINK2P20155 84 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 SERPINB6P35237 376 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 SLC25A11Q02978 314 aaKnown RBP15.28■□□□□ 0.04
USP39-217ENST00000491659 SGCGQ13326 291 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 KRT81Q14533 505 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 HADHQ16836 314 aaKnown RBP15.28■□□□□ 0.04
USP39-217ENST00000491659 CFAP58Q5T655 872 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 TMCO3Q6UWJ1 677 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 H2AFVQ71UI9 128 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 POLNQ7Z5Q5 900 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 PTAR1Q7Z6K3 402 aaPredicted RBP15.28■□□□□ 0.04
USP39-217ENST00000491659 SPATS2Q86XZ4 545 aaKnown RBP15.28■□□□□ 0.04
USP39-217ENST00000491659 GATAD2AQ86YP4 633 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 ARHGAP12Q8IWW6 846 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 ANP32EQ9BTT0 268 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 CALN1Q9BXU9 219 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 UVRAGQ9P2Y5 699 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 DKK3Q9UBP4 350 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 FTSJ1Q9UET6 329 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 LCMT1Q9UIC8 334 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 WASF3Q9UPY6 502 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 ITM2BQ9Y287 266 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 NEUROG3Q9Y4Z2 214 aa15.28■□□□□ 0.04
USP39-217ENST00000491659 SHROOM3Q8TF72 1996 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 KNL1Q8NG31 2342 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 INSIG1O15503 277 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 PIGNO95427 931 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 TOP3BO95985 862 aaKnown RBP15.27■□□□□ 0.04
USP39-217ENST00000491659 AMPD1P23109 780 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 GJC1P36383 396 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 RXRGP48443 463 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 IL10RBQ08334 325 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 RFTN1Q14699 578 aaPredicted RBP15.27■□□□□ 0.04
USP39-217ENST00000491659 SHBQ15464 509 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 LRRC73Q5JTD7 316 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 TXNRD3NBQ6F5E7 133 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 GCNT7Q6ZNI0 430 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 TTC7BQ86TV6 843 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 CNGA4Q8IV77 575 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 CXorf40AQ8TE69 158 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 SAP25Q8TEE9 199 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 ADAMTS14Q8WXS8 1223 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 VOPP1Q96AW1 172 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 CSPG4P5Q96PW8 444 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 TUBGCP5Q96RT8 1024 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms