RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PIGNO95427 931 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 POP4O95707 220 aaKnown RBP18.38■□□□□ 0.53
COL9A3-214ENST00000490398 TOP3BO95985 862 aaKnown RBP18.38■□□□□ 0.53
COL9A3-214ENST00000490398 TPM1P09493 284 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 CDH6P55285 790 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 ZNF423Q2M1K9 1284 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 TMEM259Q4ZIN3 620 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 ZNF805Q5CZA5 627 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 FBXL19Q6PCT2 694 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 GDPD4Q6W3E5 623 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 KDM7AQ6ZMT4 941 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 CNGA4Q8IV77 575 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 SLC35G2Q8TBE7 412 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 FAM71BQ8TC56 605 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 CASKIN2Q8WXE0 1202 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 PPP1R16AQ96I34 528 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 UVRAGQ9P2Y5 699 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 IPO11Q9UI26 975 aaKnown RBP18.38■□□□□ 0.53
COL9A3-214ENST00000490398 TFR2Q9UP52 801 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 BTBD3Q9Y2F9 522 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 WDFY3Q8IZQ1 3526 aa18.38■□□□□ 0.53
COL9A3-214ENST00000490398 TTC24A2A3L6 582 aaPredicted RBP18.37■□□□□ 0.53
COL9A3-214ENST00000490398 BUB1BO60566 1050 aaPredicted RBP18.37■□□□□ 0.53
COL9A3-214ENST00000490398 CER1O95813 267 aa18.37■□□□□ 0.53
COL9A3-214ENST00000490398 IGSF6O95976 241 aa18.37■□□□□ 0.53
COL9A3-214ENST00000490398 PEX11BO96011 259 aa18.37■□□□□ 0.53
COL9A3-214ENST00000490398 CEACAM1P13688 526 aa18.37■□□□□ 0.53
COL9A3-214ENST00000490398 ARL4AP40617 200 aa18.37■□□□□ 0.53
COL9A3-214ENST00000490398 CLDN2P57739 230 aa18.37■□□□□ 0.53
COL9A3-214ENST00000490398 MESDQ14696 234 aa18.37■□□□□ 0.53
COL9A3-214ENST00000490398 TSR1Q2NL82 804 aaKnown RBP18.37■□□□□ 0.53
COL9A3-214ENST00000490398 IL27RAQ6UWB1 636 aa18.37■□□□□ 0.53
COL9A3-214ENST00000490398 ZSWIM9Q86XI8 627 aa18.37■□□□□ 0.53
COL9A3-214ENST00000490398 NAXDQ8IW45 347 aa18.37■□□□□ 0.53
COL9A3-214ENST00000490398 DOCK9Q9BZ29 2069 aa18.37■□□□□ 0.53
COL9A3-214ENST00000490398 TLR4O00206 839 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 RAD51BO15315 384 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 CBFA2T3O75081 653 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 TIMP2P16035 220 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 ZNF135P52742 658 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-214ENST00000490398 C21orf59P57076 290 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 NXPH1P58417 271 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 IL10RBQ08334 325 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 SLC10A7Q0GE19 358 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 SLC14A1Q13336 389 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 DPYSL3Q14195 570 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 KRT81Q14533 505 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 SETMARQ53H47 684 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-214ENST00000490398 FRYQ5TBA9 3013 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 NEK5Q6P3R8 708 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 TMCO3Q6UWJ1 677 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 DBX2Q6ZNG2 339 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 TMEM145Q8NBT3 493 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 PCDH19Q8TAB3 1148 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 LRIG1Q96JA1 1093 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 SP110Q9HB58 689 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 DMTF1Q9Y222 760 aa18.36■□□□□ 0.53
COL9A3-214ENST00000490398 TMEM131Q92545 1883 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 AREL1O15033 823 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 AP1G1O43747 822 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 MAP3K6O95382 1288 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 PAK4O96013 591 aaPredicted RBP18.35■□□□□ 0.53
COL9A3-214ENST00000490398 PRKCGP05129 697 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 ZNF883P0CG24 379 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 PMLP29590 882 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 SEMG2Q02383 582 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 GCNT7Q6ZNI0 430 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 GATAD2AQ86YP4 633 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 CAMK1DQ8IU85 385 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 MFSD2AQ8NA29 543 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 LRRN4Q8WUT4 740 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 SLC32A1Q9H598 525 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 DONSONQ9NYP3 566 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 PCOLCE2Q9UKZ9 415 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 HYOU1Q9Y4L1 999 aa18.35■□□□□ 0.53
COL9A3-214ENST00000490398 A0A1B0GTQ1 180 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 IGLON5A6NGN9 336 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 PRAMEF26H0Y7S4 382 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 MFSD11O43934 449 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 MAFKO60675 156 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 PALMO75781 387 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 SPINK2P20155 84 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 SIM1P81133 766 aaPredicted RBP18.34■□□□□ 0.53
COL9A3-214ENST00000490398 CCDC15Q0P6D6 951 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 STAT4Q14765 748 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 HADHQ16836 314 aaKnown RBP18.34■□□□□ 0.53
COL9A3-214ENST00000490398 NCBP2-AS2Q69YL0 99 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 SRLQ86TD4 932 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 TTC7BQ86TV6 843 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 PGBD5Q8N414 524 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 LZTR1Q8N653 840 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 PQLC3Q8N755 202 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 SETD7Q8WTS6 366 aaKnown RBP18.34■□□□□ 0.53
COL9A3-214ENST00000490398 RAPGEF5Q92565 580 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 ELF4Q99607 663 aaPredicted RBP18.34■□□□□ 0.53
COL9A3-214ENST00000490398 OSBPL1AQ9BXW6 950 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 SLC17A9Q9BYT1 436 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 TPX2Q9ULW0 747 aaKnown RBP18.34■□□□□ 0.53
COL9A3-214ENST00000490398 WASF3Q9UPY6 502 aa18.34■□□□□ 0.53
COL9A3-214ENST00000490398 CEP295Q9C0D2 2601 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms