RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	CCDC60	Q8IWA6	550 aa	Predicted RBP	4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	UBALD2	Q8IYN6	164 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	SAMD14	Q8IZD0	417 aa	Predicted RBP	4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	LRRC43	Q8N309	656 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	MIER2	Q8N344	545 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	METTL13	Q8N6R0	699 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	LINC01465	Q8N7H1	131 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	MRPL43	Q8N983	215 aa	Known RBP	4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	XAGE5	Q8WWM1	108 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	RSPH1	Q8WYR4	309 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	CASP10	Q92851	521 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	COQ8B	Q96D53	544 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	FAM167A	Q96KS9	214 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	SNX27	Q96L92	541 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	RIPOR3	Q96MK2	946 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	ZNF558	Q96NG5	402 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	NECTIN4	Q96NY8	510 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	CASD1	Q96PB1	797 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	MAP7D2	Q96T17	732 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	ZNF577	Q9BSK1	485 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	LRRC2	Q9BYS8	371 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	CXorf36	Q9H7Y0	433 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	GLOD4	Q9HC38	313 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	ENTPD7	Q9NQZ7	604 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	NRBP2	Q9NSY0	501 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	SPG21	Q9NZD8	308 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	FEZ2	Q9UHY8	353 aa	Predicted RBP	4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	PCDHA10	Q9Y5I2	948 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	PLXNA3	P51805	1871 aa		4.41	□□□□□ -1.7
SNRNP40-205	ENST00000486941	MTCL1	Q9Y4B5	1905 aa	Known RBP	4.4	□□□□□ -1.7
SNRNP40-205	ENST00000486941		A0A0U1RQF3	1178 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CCDC196	A0A1B0GTZ2	297 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941		H7C1Q1	480 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ADAM10	O14672	748 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	VTN	P04004	478 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NPS	P0C0P6	89 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DARS	P14868	501 aa	Known RBP	4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GNA11	P29992	359 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CIITA	P33076	1130 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MTHFR	P42898	656 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ALDH7A1	P49419	539 aa	Known RBP	4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CLCN3	P51790	818 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	VCP	P55072	806 aa	Known RBP	4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PSG6	Q00889	435 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SET	Q01105	290 aa	Predicted RBP	4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MYO1E	Q12965	1108 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GIT2	Q14161	759 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	KRT32	Q14532	448 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SMC1A	Q14683	1233 aa	Known RBP	4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TRIP6	Q15654	476 aa	Known RBP	4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CLLU1OS	Q5K130	101 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	JAKMIP3	Q5VZ66	844 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DPY19L3	Q6ZPD9	716 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ECHDC2	Q86YB7	292 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SLC39A11	Q8N1S5	342 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TERB1	Q8NA31	727 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CCDC12	Q8WUD4	166 aa	Predicted RBP	4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ATOH1	Q92858	354 aa	Predicted RBP	4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MRPL9	Q9BYD2	267 aa	Known RBP	4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ZMYND12	Q9H0C1	365 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	C6orf50	Q9HD87	102 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CHST12	Q9NRB3	414 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DACT1	Q9NYF0	836 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	XPR1	Q9UBH6	696 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GABBR1	Q9UBS5	961 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TCEAL9	Q9UHQ7	104 aa		4.4	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DOCK8	Q8NF50	2099 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DENND4A	Q7Z401	1863 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	KLF18	A0A0U1RQI7	1052 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	C2CD4D	B7Z1M9	353 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941		H3BUI4	141 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PRPF3	O43395	683 aa	Known RBP	4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	EXOC3	O60645	756 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CXCL14	O95715	111 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PDGFB	P01127	241 aa	Predicted RBP	4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ALDH2	P05091	517 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GRP	P07492	148 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	HMGB1	P09429	215 aa	Known RBP	4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SFN	P31947	248 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	RENBP	P51606	427 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GPC3	P51654	580 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CLCN5	P51795	746 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	JAK3	P52333	1124 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	POLG	P54098	1239 aa	Predicted RBP	4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	UCP3	P55916	312 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	LAMB3	Q13751	1172 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ADCK5	Q3MIX3	580 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ATAT1	Q5SQI0	421 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	L1TD1	Q5T7N2	865 aa	Known RBP	4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DEPDC1	Q5TB30	811 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TRMT1L	Q7Z2T5	733 aa	Known RBP	4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PIP4P1	Q86T03	277 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	FBXL16	Q8N461	479 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	RDM1	Q8NG50	284 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	BICD2	Q8TD16	824 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DAZAP1	Q96EP5	407 aa	Known RBP	4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	HMCES	Q96FZ2	354 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SLC35A4	Q96G79	324 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MRGPRX1	Q96LB2	322 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TCEANC2	Q96MN5	208 aa		4.39	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms