RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 HPCAL4Q9UM19 191 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 AP4E1Q9UPM8 1137 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 LOC400499M0QZD8 3231 aa14.32□□□□□ -0.12
UPF3A-204ENST00000475218 TDRD6O60522 2096 aaKnown RBP14.31□□□□□ -0.12
UPF3A-204ENST00000475218 ZFYVE26Q68DK2 2539 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 LRRK1Q38SD2 2015 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 ANKRD62A6NC57 917 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 IGLON5A6NGN9 336 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 J3KR12 359 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 POP4O95707 220 aaKnown RBP14.31□□□□□ -0.12
UPF3A-204ENST00000475218 LDOC1O95751 146 aaPredicted RBP14.31□□□□□ -0.12
UPF3A-204ENST00000475218 PAK4O96013 591 aaPredicted RBP14.31□□□□□ -0.12
UPF3A-204ENST00000475218 TCF4P15884 667 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 RPS21P63220 83 aaKnown RBP14.31□□□□□ -0.12
UPF3A-204ENST00000475218 FANCCQ00597 558 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 INAVAQ3KP66 663 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 PARP15Q460N3 678 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 FILIP1LQ4L180 1135 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 INO80DQ53TQ3 878 aaPredicted RBP14.31□□□□□ -0.12
UPF3A-204ENST00000475218 AFMIDQ63HM1 303 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 KIAA1161Q6NSJ0 714 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 FBXL19Q6PCT2 694 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 ARHGAP12Q8IWW6 846 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 RYBPQ8N488 228 aaPredicted RBP14.31□□□□□ -0.12
UPF3A-204ENST00000475218 NPWQ8N729 165 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 LRIG1Q96JA1 1093 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 EDEM3Q9BZQ6 932 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 ISCUQ9H1K1 167 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 KLHL11Q9NVR0 708 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 PCSK1NQ9UHG2 260 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 MFHAS1Q9Y4C4 1052 aa14.31□□□□□ -0.12
UPF3A-204ENST00000475218 GOLGA4Q13439 2230 aaKnown RBP14.31□□□□□ -0.12
UPF3A-204ENST00000475218 ZSCAN5CA6NGD5 496 aaPredicted RBP14.3□□□□□ -0.12
UPF3A-204ENST00000475218 LRCH4O75427 683 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 DGKAP23743 735 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 MIPP30301 263 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 AKT2P31751 481 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 SNRPD1P62314 119 aaKnown RBP14.3□□□□□ -0.12
UPF3A-204ENST00000475218 KLHL30Q0D2K2 578 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 CCDC15Q0P6D6 951 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 MAPK8IP2Q13387 824 aaPredicted RBP14.3□□□□□ -0.12
UPF3A-204ENST00000475218 PROX2Q3B8N5 592 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 CCDC157Q569K6 752 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 Q6ZSR6 202 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 PROSER1Q86XN7 944 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 TP53INP2Q8IXH6 220 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 FNIP1Q8TF40 1166 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 CELF6Q96J87 481 aaKnown RBP14.3□□□□□ -0.12
UPF3A-204ENST00000475218 EXOC2Q96KP1 924 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 CALN1Q9BXU9 219 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 SLC39A8Q9C0K1 460 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 DHX35Q9H5Z1 703 aaKnown RBP14.3□□□□□ -0.12
UPF3A-204ENST00000475218 CNOT8Q9UFF9 292 aaKnown RBP14.3□□□□□ -0.12
UPF3A-204ENST00000475218 APC2O95996 2303 aa14.3□□□□□ -0.12
UPF3A-204ENST00000475218 FGF10O15520 208 aaPredicted RBP14.29□□□□□ -0.12
UPF3A-204ENST00000475218 MAGEC1O60732 1142 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 SERPINC1P01008 464 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 IL1R2P27930 398 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 RGRP47804 291 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 TPI1P60174 286 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 FZD2Q14332 565 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 GDPD4Q6W3E5 623 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 KYAT3Q6YP21 454 aaKnown RBP14.29□□□□□ -0.12
UPF3A-204ENST00000475218 MDM1Q8TC05 714 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 FEM1CQ96JP0 617 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 NSMCE3Q96MG7 304 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 GDAP1L1Q96MZ0 367 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 LENG8Q96PV6 779 aaPredicted RBP14.29□□□□□ -0.12
UPF3A-204ENST00000475218 CATSPERBQ9H7T0 1116 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 KLF15Q9UIH9 416 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 PNMA8BQ9ULN7 279 aaPredicted RBP14.29□□□□□ -0.12
UPF3A-204ENST00000475218 PCDHGA1Q9Y5H4 931 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 HS3ST3A1Q9Y663 406 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 TSPAN6O43657 245 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 PRAMEF11O60813 436 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 TIMP2P16035 220 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 HTR7P34969 479 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 PAPOLAP51003 745 aaKnown RBP14.29□□□□□ -0.12
UPF3A-204ENST00000475218 NDST2P52849 883 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 MYLKQ15746 1914 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 ZNF542PQ5EBM4 170 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 ERMARDQ5T6L9 678 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 PPP1R2P3Q6NXS1 205 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 ARHGAP36Q6ZRI8 547 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 RFX8Q6ZV50 586 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 ZSWIM9Q86XI8 627 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 CASKIN2Q8WXE0 1202 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 RAB7BQ96AH8 199 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 ZNF653Q96CK0 615 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 OSBPL1AQ9BXW6 950 aa14.29□□□□□ -0.12
UPF3A-204ENST00000475218 LY6G6EA0A0G2JKS1 128 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 A0A1W2PQJ5 194 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 A6NNZ2 444 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 SIGLEC6O43699 453 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 BUB1BO60566 1050 aaPredicted RBP14.28□□□□□ -0.12
UPF3A-204ENST00000475218 PIAS2O75928 621 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 PIGNO95427 931 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 ERCC2P18074 760 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 PFN3P60673 137 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 RHOAP61586 193 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms