RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 NR1D2Q14995 579 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 SNRNP35Q16560 246 aaKnown RBP8.18□□□□□ -1.1
USP54-211ENST00000474929 RAB41Q5JT25 222 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 ARL6IP4Q66PJ3 421 aaKnown RBP8.18□□□□□ -1.1
USP54-211ENST00000474929 PM20D1Q6GTS8 502 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 MSANTD2Q6P1R3 559 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 MTFR2Q6P444 385 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 ZNF438Q7Z4V0 828 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 CBWD2Q8IUF1 395 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 C12orf29Q8N999 325 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 ZSWIM2Q8NEG5 633 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 RAD54LQ92698 747 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 PMEPA1Q969W9 287 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 SNRNP40Q96DI7 357 aaKnown RBP8.18□□□□□ -1.1
USP54-211ENST00000474929 C8orf76Q96K31 380 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 PLIN2Q99541 437 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 NT5C1AQ9BXI3 368 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 CAAP1Q9H8G2 361 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 FBXO8Q9NRD0 319 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 ASF1BQ9NVP2 202 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 SUCOQ9UBS9 1254 aaKnown RBP8.18□□□□□ -1.1
USP54-211ENST00000474929 PCDHGA6Q9Y5G7 932 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 TCAF2A6NFQ2 919 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 ZSCAN5CA6NGD5 496 aaPredicted RBP8.17□□□□□ -1.1
USP54-211ENST00000474929 C21orf140B9A014 251 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 NEMP1O14524 444 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 FANCGO15287 622 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 PRICKLE3O43900 615 aaPredicted RBP8.17□□□□□ -1.1
USP54-211ENST00000474929 BNIP3LO60238 219 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 KLHL41O60662 606 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 EIF5BO60841 1220 aaKnown RBP8.17□□□□□ -1.1
USP54-211ENST00000474929 CREG1O75629 220 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 EIF4A3P38919 411 aaKnown RBP8.17□□□□□ -1.1
USP54-211ENST00000474929 CLCN6P51797 869 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 ART1P52961 327 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 RPS24P62847 133 aaKnown RBP8.17□□□□□ -1.1
USP54-211ENST00000474929 GPLD1P80108 840 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 B4GALNT1Q00973 533 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 MC2RQ01718 297 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 INCA1Q0VD86 236 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 NNTQ13423 1086 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 SQSTM1Q13501 440 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 DLG2Q15700 870 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 AMZ1Q400G9 498 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 FSCBQ5H9T9 825 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 MS4A13Q5J8X5 152 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 TPRG1LQ5T0D9 272 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 MMS22LQ6ZRQ5 1243 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 SLC47A2Q86VL8 602 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 XYLT1Q86Y38 959 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 HID1Q8IV36 788 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 APCDD1Q8J025 514 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 SH2D3CQ8N5H7 860 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 UBE2Q2Q8WVN8 375 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 IPO9Q96P70 1041 aaKnown RBP8.17□□□□□ -1.1
USP54-211ENST00000474929 RBM15Q96T37 977 aaKnown RBP eCLIP8.17□□□□□ -1.1
USP54-211ENST00000474929 NUDT22Q9BRQ3 303 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 IKZF4Q9H2S9 585 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 FOXD4L1Q9NU39 408 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 KLQ9UEF7 1012 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 IL36AQ9UHA7 158 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 SFMBT1Q9UHJ3 866 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 USP25Q9UHP3 1055 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 FADS3Q9Y5Q0 445 aa8.17□□□□□ -1.1
USP54-211ENST00000474929 ATRQ13535 2644 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 SSU72P8A0A1W2PR75 194 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 B4DGG1 531 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 POLR1CO15160 346 aaPredicted RBP8.16□□□□□ -1.1
USP54-211ENST00000474929 KCNN4O15554 427 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 DNAJB5O75953 348 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 MT-ND3P03897 115 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 RPN1P04843 607 aaKnown RBP8.16□□□□□ -1.1
USP54-211ENST00000474929 CELA2BP08218 269 aaPredicted RBP8.16□□□□□ -1.1
USP54-211ENST00000474929 IGFALSP35858 605 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 TKTL1P51854 596 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 TBX4P57082 545 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 FOXM1Q08050 763 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 KCNA1Q09470 495 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 MN1Q10571 1320 aaPredicted RBP8.16□□□□□ -1.1
USP54-211ENST00000474929 NCOA4Q13772 614 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 MCM6Q14566 821 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 ZNF630Q2M218 657 aaPredicted RBP8.16□□□□□ -1.1
USP54-211ENST00000474929 SGSM1Q2NKQ1 1148 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 TSR1Q2NL82 804 aaKnown RBP8.16□□□□□ -1.1
USP54-211ENST00000474929 RABGAP1LQ5R372 815 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 CYB5D1Q6P9G0 228 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 RPTNQ6XPR3 784 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 ZNF808Q8N4W9 903 aaPredicted RBP8.16□□□□□ -1.1
USP54-211ENST00000474929 TTC39CQ8N584 583 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 BMPERQ8N8U9 685 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 FAM46DQ8NEK8 389 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 STAMBPL1Q96FJ0 436 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 SERPINB11Q96P15 392 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 IMPG2Q9BZV3 1241 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 DPEP2Q9H4A9 486 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 CBX8Q9HC52 389 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 BLOC1S4Q9NUP1 217 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 TBC1D7Q9P0N9 293 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 C5AR2Q9P296 337 aa8.16□□□□□ -1.1
USP54-211ENST00000474929 HS3ST2Q9Y278 367 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms