RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 BUB1O43683 1085 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 TLX3O43711 291 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-210ENST00000472880 TMCC1O94876 653 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 CSF2P04141 144 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 GIMD1P0DJR0 217 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 NME1P15531 152 aaKnown RBP20.05■□□□□ 0.8
COL9A3-210ENST00000472880 EPHB2P29323 1055 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 EIF2S3P41091 472 aaKnown RBP20.05■□□□□ 0.8
COL9A3-210ENST00000472880 DUSP3P51452 185 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-210ENST00000472880 MYL5Q02045 173 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 UBXN1Q04323 297 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 RAD51Q06609 339 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 PDE1CQ14123 709 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-210ENST00000472880 MYLK3Q32MK0 819 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 ATXN7L2Q5T6C5 722 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-210ENST00000472880 SCYL2Q6P3W7 929 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 SASS6Q6UVJ0 657 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 MON1BQ7L1V2 547 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 ASB12Q8WXK4 309 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 CRELD1Q96HD1 420 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 KLHL32Q96NJ5 620 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 KLF6Q99612 283 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-210ENST00000472880 USP29Q9HBJ7 922 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 ANO10Q9NW15 660 aa20.05■□□□□ 0.8
COL9A3-210ENST00000472880 LIMA1Q9UHB6 759 aaKnown RBP20.05■□□□□ 0.8
COL9A3-210ENST00000472880 TDRD6O60522 2096 aaKnown RBP20.04■□□□□ 0.8
COL9A3-210ENST00000472880 SIGLEC16A6NMB1 481 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 K7ESM1 405 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 CCP110O43303 1012 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 BRINP1O60477 761 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 NEBLO76041 1014 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 IGSF6O95976 241 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 DESP17661 470 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 C1QBPQ07021 282 aaKnown RBP20.04■□□□□ 0.8
COL9A3-210ENST00000472880 STX1AQ16623 288 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 GDPD4Q6W3E5 623 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 PYROXD2Q8N2H3 581 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 FAM181AQ8N9Y4 354 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 SNIP1Q8TAD8 396 aaKnown RBP20.04■□□□□ 0.8
COL9A3-210ENST00000472880 CASKIN2Q8WXE0 1202 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 MCEEQ96PE7 176 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 DEPDC7Q96QD5 511 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 EPAS1Q99814 870 aa20.04■□□□□ 0.8
COL9A3-210ENST00000472880 SPINT1O43278 529 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 CREB3O43889 395 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 OPA1O60313 960 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 GP1BAP07359 652 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 MYF5P13349 255 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 JUNDP17535 347 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 CDK11BP21127 795 aaKnown RBP20.03■□□□□ 0.8
COL9A3-210ENST00000472880 ITPKBP27987 946 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 ACTN2P35609 894 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 ZNF143P52747 638 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-210ENST00000472880 RHOAP61586 193 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 ZCCHC8Q6NZY4 707 aaKnown RBP20.03■□□□□ 0.8
COL9A3-210ENST00000472880 AGPAT1Q99943 283 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 TTYH3Q9C0H2 523 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 ABCG4Q9H172 646 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 CATSPERBQ9H7T0 1116 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 CSNK1G3Q9Y6M4 447 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 KNTC1P50748 2209 aa20.03■□□□□ 0.8
COL9A3-210ENST00000472880 EIF4E1BA6NMX2 242 aaKnown RBP20.02■□□□□ 0.8
COL9A3-210ENST00000472880 GOLGA6L22H0YM25 854 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 AREL1O15033 823 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 AQP9O43315 295 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 THOP1P52888 689 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 AIF1P55008 147 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 YBEYP58557 167 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-210ENST00000472880 PFN3P60673 137 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 PTK2BQ14289 1009 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 PARP15Q460N3 678 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 INO80DQ53TQ3 878 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-210ENST00000472880 LRRC73Q5JTD7 316 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 TTC7BQ86TV6 843 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 IFI44Q8TCB0 444 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 LMX1AQ8TE12 382 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 CXorf40AQ8TE69 158 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 FGF11Q92914 225 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 HMCESQ96FZ2 354 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 ERGIC2Q96RQ1 377 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 C1QTNF7Q9BXJ2 289 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 NOL6Q9H6R4 1146 aaKnown RBP20.02■□□□□ 0.8
COL9A3-210ENST00000472880 NCKIPSDQ9NZQ3 722 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 PCDHB1Q9Y5F3 818 aa20.02■□□□□ 0.8
COL9A3-210ENST00000472880 LY6G6EA0A0G2JKS1 128 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 RASA4BC9J798 803 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 RASA4O43374 803 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 TM7SF2O76062 418 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 CCDC172P0C7W6 258 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 IGFALSP35858 605 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 TBC1D25Q3MII6 688 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 TPRG1LQ5T0D9 272 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 CDCP2Q5VXM1 449 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 DCUN1D2Q6PH85 259 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 VPS36Q86VN1 386 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 MAPK15Q8TD08 544 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 BTN2A2Q8WVV5 523 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 VOPP1Q96AW1 172 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 NCAPGQ9BPX3 1015 aa20.01■□□□□ 0.79
COL9A3-210ENST00000472880 CNPY3Q9BT09 278 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms