RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PLPP6Q8IY26 295 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 OR13H1Q8NG92 308 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 ZNF653Q96CK0 615 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 KLHL32Q96NJ5 620 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 BBC3Q96PG8 261 aaPredicted RBP15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 TTYH3Q9C0H2 523 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 DHX35Q9H5Z1 703 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 CBX8Q9HC52 389 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 AIPL1Q9NZN9 384 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 PCSK1NQ9UHG2 260 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 ITM2BQ9Y287 266 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 SMG1Q96Q15 3661 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 FASNP49327 2511 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 A0A087WV48 116 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 WASH4PA8MWX3 477 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 DDX3XO00571 662 aaKnown RBP eCLIP15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 NEMP1O14524 444 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 FGF10O15520 208 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 AP1G1O43747 822 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 POP4O95707 220 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 IGSF6O95976 241 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 FTLP02792 175 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 PRKCIP41743 596 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 YBEYP58557 167 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 RHOAP61586 193 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 TPM4P67936 248 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 FGL2Q14314 439 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 NR1I3Q14994 352 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 CA9Q16790 459 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 MYLK3Q32MK0 819 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 PARP15Q460N3 678 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 LRRC73Q5JTD7 316 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 LUZP1Q86V48 1076 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 TMPRSS12Q86WS5 348 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 FEM1CQ96JP0 617 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 GDAP1L1Q96MZ0 367 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 PEBP4Q96S96 227 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 SNRNP25Q9BV90 132 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 SLC17A9Q9BYT1 436 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 TRIM7Q9C029 511 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 MYO1AQ9UBC5 1043 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 CNOT8Q9UFF9 292 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 GGT7Q9UJ14 662 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 PCDHGA1Q9Y5H4 931 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 ADAMTS20P59510 1910 aa15.95■□□□□ 0.14
CCDC88B-205ENST00000472524 A6NNZ2 444 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 EEF2KO00418 725 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 RFPL3O75679 317 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 RNF8O76064 485 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 PAK4O96013 591 aaPredicted RBP15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 GZMAP12544 262 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 ACADVLP49748 655 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 FANCCQ00597 558 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 RAD51Q06609 339 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 SERINC3Q13530 473 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 KLHL40Q2TBA0 621 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 TDRD12Q587J7 1177 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 KANSL1Q7Z3B3 1105 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 CASKIN2Q8WXE0 1202 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 RAB7BQ96AH8 199 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 CELF6Q96J87 481 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 EXOC2Q96KP1 924 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 OSBPL1AQ9BXW6 950 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 CAAP1Q9H8G2 361 aa15.94■□□□□ 0.14
CCDC88B-205ENST00000472524 TMEM191CA6NGB0 347 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 IGLON5A6NGN9 336 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 RAD51BO15315 384 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 TSPAN6O43657 245 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 JUPP14923 745 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 HTR7P34969 479 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 SGCGQ13326 291 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 INO80DQ53TQ3 878 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 ERMARDQ5T6L9 678 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 GDPD4Q6W3E5 623 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 Q6ZSR6 202 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 ABI3BPQ7Z7G0 1075 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 SLC22A18ASQ8N1D0 253 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 UMODL1-AS1Q8N2C9 162 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 ARFGAP1Q8N6T3 406 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 TSC1Q92574 1164 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 VOPP1Q96AW1 172 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 BMFQ96LC9 184 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 DCBLD2Q96PD2 775 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 KCTD15Q96SI1 283 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 NCAPGQ9BPX3 1015 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 EDEM3Q9BZQ6 932 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 KLHL11Q9NVR0 708 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 LHX3Q9UBR4 397 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 UBA2Q9UBT2 640 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 SCINQ9Y6U3 715 aa15.93■□□□□ 0.14
CCDC88B-205ENST00000472524 POM121BA6NF01 834 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 J3KR12 359 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 INSIG1O15503 277 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 SPINT1O43278 529 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 DAPK3O43293 454 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 PRPSAP2O60256 369 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 MIPP30301 263 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 UBASH3AP57075 661 aa15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 TARDBPQ13148 414 aaKnown RBP eCLIP15.92■□□□□ 0.14
CCDC88B-205ENST00000472524 CYTH1Q15438 398 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms