RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 PMS2CLQ68D20 193 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 GDPD4Q6W3E5 623 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 B4GALNT4Q76KP1 1039 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 ERN2Q76MJ5 926 aaKnown RBP12.1□□□□□ -0.47
VPS13D-204ENST00000469054 LPCAT2Q7L5N7 544 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 ZC3H18Q86VM9 953 aaKnown RBP12.1□□□□□ -0.47
VPS13D-204ENST00000469054 SLC35F6Q8N357 371 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 SUMF1Q8NBK3 374 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 NKD2Q969F2 451 aaPredicted RBP12.1□□□□□ -0.47
VPS13D-204ENST00000469054 FAM131CQ96AQ9 280 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 ZNF419Q96HQ0 510 aaPredicted RBP12.1□□□□□ -0.47
VPS13D-204ENST00000469054 NUDCD1Q96RS6 583 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 TUBGCP5Q96RT8 1024 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 GPR174Q9BXC1 333 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 DUSP15Q9H1R2 295 aaPredicted RBP12.1□□□□□ -0.47
VPS13D-204ENST00000469054 NT5MQ9NPB1 228 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 HAUS2Q9NVX0 235 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 RAB23Q9ULC3 237 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 SMG5Q9UPR3 1016 aaKnown RBP12.1□□□□□ -0.47
VPS13D-204ENST00000469054 NUP205Q92621 2012 aa12.1□□□□□ -0.47
VPS13D-204ENST00000469054 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 TTC24A2A3L6 582 aaPredicted RBP12.09□□□□□ -0.47
VPS13D-204ENST00000469054 C16orf96A6NNT2 1141 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 ENC1O14682 589 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 SLC7A4O43246 635 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 MTSS1O43312 755 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 GJB3O75712 270 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 PIGNO95427 931 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 SEMA4FO95754 770 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 LMNAP02545 664 aaKnown RBP12.09□□□□□ -0.47
VPS13D-204ENST00000469054 CES1P23141 567 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 ITGB7P26010 798 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 NEK3P51956 506 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 AP1S1P61966 158 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 ITKQ08881 620 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 ZBTB17Q13105 803 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 PRKD1Q15139 912 aaPredicted RBP12.09□□□□□ -0.47
VPS13D-204ENST00000469054 LPAL2Q16609 132 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 TEX44Q53QW1 395 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 PIP5KL1Q5T9C9 394 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 AGBL4Q5VU57 503 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 NCEH1Q6PIU2 408 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 SLC13A5Q86YT5 568 aaPredicted RBP12.09□□□□□ -0.47
VPS13D-204ENST00000469054 CAMK1DQ8IU85 385 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 TMEFF1Q8IYR6 380 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 DEFB119Q8N690 84 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 TTC13Q8NBP0 860 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 CADM4Q8NFZ8 388 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 OR14C36Q8NHC7 312 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 HCAR2Q8TDS4 363 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 ZNF641Q96N77 438 aaPredicted RBP12.09□□□□□ -0.47
VPS13D-204ENST00000469054 KLHL32Q96NJ5 620 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 PHOX2BQ99453 314 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 IL12RB2Q99665 862 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 HDAC8Q9BY41 377 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 POLR1EQ9GZS1 481 aaKnown RBP12.09□□□□□ -0.47
VPS13D-204ENST00000469054 SUV39H2Q9H5I1 410 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 SCUBE2Q9NQ36 999 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 KCND1Q9NSA2 647 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 SEPT10Q9P0V9 454 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 DKK3Q9UBP4 350 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 MUC6Q6W4X9 2439 aa12.09□□□□□ -0.47
VPS13D-204ENST00000469054 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.08□□□□□ -0.48
VPS13D-204ENST00000469054 TCRBV7S2A1N4TA0A589 114 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 FAM47DPA6NHR8 397 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 LRRC72A6NJI9 287 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 H7C0C1 242 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 PLRG1O43660 514 aaKnown RBP12.08□□□□□ -0.48
VPS13D-204ENST00000469054 HLA-DQB2P05538 268 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 RBP3P10745 1247 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 ADRB3P13945 408 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 PTPN3P26045 913 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 SERPINA4P29622 427 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 ATP5OP48047 213 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 DHPSP49366 369 aaPredicted RBP12.08□□□□□ -0.48
VPS13D-204ENST00000469054 ADPRHP54922 357 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 EIF3EP60228 445 aaKnown RBP12.08□□□□□ -0.48
VPS13D-204ENST00000469054 BCL2L1Q07817 233 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 SLC45A4Q5BKX6 768 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 ALG1LQ6GMV1 187 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 LAIR1Q6GTX8 287 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 FBXL19Q6PCT2 694 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 CNTD1Q8N815 330 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 OR2T34Q8NGX1 318 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 HTR3CQ8WXA8 447 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 FOXJ1Q92949 421 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 RAB7BQ96AH8 199 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 LOXL4Q96JB6 756 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 NSMCE3Q96MG7 304 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 QKIQ96PU8 341 aaKnown RBP eCLIP12.08□□□□□ -0.48
VPS13D-204ENST00000469054 SEMA3CQ99985 751 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 FAM118BQ9BPY3 351 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 PCED1AQ9H1Q7 454 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 KDM4CQ9H3R0 1056 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 C6orf106Q9H6K1 298 aaPredicted RBP12.08□□□□□ -0.48
VPS13D-204ENST00000469054 ATP13A3Q9H7F0 1226 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 NOD2Q9HC29 1040 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 ATP8A1Q9Y2Q0 1164 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 TTLL3Q9Y4R7 772 aa12.08□□□□□ -0.48
VPS13D-204ENST00000469054 BCLAF3A2AJT9 711 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms