RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 CCL22O00626 93 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 GRIA3P42263 894 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 YAP1P46937 504 aaKnown RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 BST2Q10589 180 aaKnown RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 MGAT5BQ3V5L5 792 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 CCDC153Q494R4 210 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 ACBD5Q5T8D3 534 aaPredicted RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 KLHL35Q6PF15 583 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 ZBTB49Q6ZSB9 765 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 HFE2Q6ZVN8 426 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 OFCC1Q8IZS5 231 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 CYGBQ8WWM9 190 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 LPGAT1Q92604 370 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 EDEM1Q92611 657 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 ITFG2Q969R8 447 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 PARK7Q99497 189 aaKnown RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 RNF39Q9H2S5 420 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 FBRSL1Q9HCM7 1045 aaKnown RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 EBF1Q9UH73 591 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 DMTF1Q9Y222 760 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 IQCA1LA6NCM1 817 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 MT-CYBP00156 380 aaPredicted RBP12.57□□□□□ -0.4
HDAC4-208ENST00000463007 NFKB1P19838 968 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 BCAT1P54687 386 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 PSME3P61289 254 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 CSHL1Q14406 222 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 TMEM259Q4ZIN3 620 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 FBXO47Q5MNV8 452 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 GRTP1Q5TC63 336 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 CLEC6AQ6EIG7 209 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 KLC3Q6P597 504 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 CATSPER4Q7RTX7 472 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 HERC6Q8IVU3 1022 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 GAB3Q8WWW8 586 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 SIKE1Q9BRV8 207 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 RRN3Q9NYV6 651 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 CDC14AQ9UNH5 594 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 RNF11Q9Y3C5 154 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 PATJQ8NI35 1801 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 RNF103-CHMP3A0A140T963 221 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 CASQ2O14958 399 aaPredicted RBP12.57□□□□□ -0.4
HDAC4-208ENST00000463007 GRID2O43424 1007 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 NR1H2P55055 460 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 MFSD10Q14728 455 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 RWDD4Q6NW29 188 aaKnown RBP12.57□□□□□ -0.4
HDAC4-208ENST00000463007 PAQR9Q6ZVX9 377 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 IPMKQ8NFU5 416 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 LRRC40Q9H9A6 602 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 TBC1D30Q9Y2I9 924 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 SCN10AQ9Y5Y9 1956 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 DENRO43583 198 aaKnown RBP12.57□□□□□ -0.4
HDAC4-208ENST00000463007 XPOTO43592 962 aaKnown RBP12.57□□□□□ -0.4
HDAC4-208ENST00000463007 GLDCP23378 1020 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 YWHAQP27348 245 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 MAGEA10P43363 369 aaPredicted RBP12.57□□□□□ -0.4
HDAC4-208ENST00000463007 LIMK2P53671 638 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 LDB1Q86U70 411 aaPredicted RBP12.57□□□□□ -0.4
HDAC4-208ENST00000463007 RNF34Q969K3 372 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 MED10Q9BTT4 135 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 OXSMQ9NWU1 459 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 NDUFA13Q9P0J0 144 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 RSL24D1Q9UHA3 163 aaKnown RBP12.57□□□□□ -0.4
HDAC4-208ENST00000463007 CLEC11AQ9Y240 323 aa12.57□□□□□ -0.4
HDAC4-208ENST00000463007 TIMM13Q9Y5L4 95 aaPredicted RBP12.57□□□□□ -0.4
HDAC4-208ENST00000463007 DLX3O60479 287 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 PMPCBO75439 489 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 BEST1O76090 585 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 ALDH1A2O94788 518 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 CYP2C9P11712 490 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 MYL4P12829 197 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 ERCC2P18074 760 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 NR4A1P22736 598 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 CES1P23141 567 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 WARSP23381 471 aaKnown RBP12.56□□□□□ -0.4
HDAC4-208ENST00000463007 NAA20P61599 178 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 LPIN1Q14693 890 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 PCSK7Q16549 785 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 HABP4Q5JVS0 413 aaKnown RBP12.56□□□□□ -0.4
HDAC4-208ENST00000463007 PRAMEF19Q5SWL8 479 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 XKR5Q6UX68 686 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 OSTM1Q86WC4 334 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 RP9Q8TA86 221 aaKnown RBP12.56□□□□□ -0.4
HDAC4-208ENST00000463007 ELMO2Q96JJ3 720 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 PAIP1Q9H074 479 aaKnown RBP12.56□□□□□ -0.4
HDAC4-208ENST00000463007 STN1Q9H668 368 aaKnown RBP12.56□□□□□ -0.4
HDAC4-208ENST00000463007 RAB26Q9ULW5 256 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 RAP2CQ9Y3L5 183 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 DFFAO00273 331 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 PTGESO14684 152 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 GIPC1O14908 333 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 AURKAO14965 403 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 ZFXP17010 805 aaPredicted RBP12.56□□□□□ -0.4
HDAC4-208ENST00000463007 IGFBP6P24592 240 aaPredicted RBP12.56□□□□□ -0.4
HDAC4-208ENST00000463007 LRPAP1P30533 357 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 CDH13P55290 713 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 NOMO2Q5JPE7 1267 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 STRADAQ7RTN6 431 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 TLK2Q86UE8 772 aa12.56□□□□□ -0.4
HDAC4-208ENST00000463007 CEP97Q8IW35 865 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms