RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 KDELR3O43731 214 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 TM7SF2O76062 418 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 PLEKP08567 350 aaPredicted RBP13.49□□□□□ -0.25
HMGB3-204ENST00000448905 TGM2P21980 687 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 XPAP23025 273 aaPredicted RBP13.49□□□□□ -0.25
HMGB3-204ENST00000448905 ACVRL1P37023 503 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 SUOXP51687 545 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 ADKP55263 362 aaKnown RBP13.49□□□□□ -0.25
HMGB3-204ENST00000448905 PPARDQ03181 441 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 VAC14Q08AM6 782 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 C2CD6Q53TS8 623 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 PRRT3Q5FWE3 981 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 CT47A1Q5JQC4 288 aaPredicted RBP13.49□□□□□ -0.25
HMGB3-204ENST00000448905 NAA35Q5VZE5 725 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 BNIPLQ7Z465 357 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 ZNF843Q8N446 348 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 CXorf40AQ8TE69 158 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 RXFP2Q8WXD0 754 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 KLHL32Q96NJ5 620 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 TMEM248Q9NWD8 314 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 DONSONQ9NYP3 566 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.49□□□□□ -0.25
HMGB3-204ENST00000448905 ZNF212Q9UDV6 495 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 APOBEC3BQ9UH17 382 aaKnown RBP13.49□□□□□ -0.25
HMGB3-204ENST00000448905 PCDHGA8Q9Y5G5 932 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 GCN1Q92616 2671 aaKnown RBP13.48□□□□□ -0.25
HMGB3-204ENST00000448905 LY6G6EA0A0G2JKS1 128 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 LMO7DNF2Z398 122 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 MUSKO15146 869 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 LZTS3O60299 673 aaPredicted RBP13.48□□□□□ -0.25
HMGB3-204ENST00000448905 UGT2B4P06133 528 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 MMEP08473 750 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 KRT3P12035 628 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 CTSEP14091 401 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 DESP17661 470 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 HTR1BP28222 390 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 EIF4A3P38919 411 aaKnown RBP13.48□□□□□ -0.25
HMGB3-204ENST00000448905 MLLT3P42568 568 aaPredicted RBP13.48□□□□□ -0.25
HMGB3-204ENST00000448905 PEX5P50542 639 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 ELOCQ15369 112 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 CDO1Q16878 200 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 INO80DQ53TQ3 878 aaPredicted RBP13.48□□□□□ -0.25
HMGB3-204ENST00000448905 C3orf38Q5JPI3 329 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 MIIPQ5JXC2 388 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 GUSBP11Q6P575 273 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 LVRNQ6Q4G3 990 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 STRADAQ7RTN6 431 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 NOP9Q86U38 636 aaKnown RBP13.48□□□□□ -0.25
HMGB3-204ENST00000448905 SDR16C5Q8N3Y7 309 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 FSTL5Q8N475 847 aaPredicted RBP13.48□□□□□ -0.25
HMGB3-204ENST00000448905 EMC1Q8N766 993 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 OR6K2Q8NGY2 324 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 WDR36Q8NI36 951 aaKnown RBP13.48□□□□□ -0.25
HMGB3-204ENST00000448905 CENPTQ96BT3 561 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 TBC1D31Q96DN5 1066 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 VCPIP1Q96JH7 1222 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 GDAP1L1Q96MZ0 367 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 NAA15Q9BXJ9 866 aaKnown RBP13.48□□□□□ -0.25
HMGB3-204ENST00000448905 TTYH3Q9C0H2 523 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 CPNE5Q9HCH3 593 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 PADI4Q9UM07 663 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 SATB2Q9UPW6 733 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 FHOD1Q9Y613 1164 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 U3KQA8 63 aa13.48□□□□□ -0.25
HMGB3-204ENST00000448905 ANKRD62A6NC57 917 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 F8VZ95 297 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 YY2O15391 372 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 MMP20O60882 483 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 C1QL1O75973 258 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 CD160O95971 181 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 IGSF6O95976 241 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 ALPIP09923 528 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 MMP8P22894 467 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 EEF1GP26641 437 aaKnown RBP13.47□□□□□ -0.25
HMGB3-204ENST00000448905 GKP32189 559 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 NOMO3P69849 1222 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 CDR2Q01850 454 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 ELP6Q0PNE2 266 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 EIF2B5Q13144 721 aaKnown RBP13.47□□□□□ -0.25
HMGB3-204ENST00000448905 C1orf61Q13536 156 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 GRM3Q14832 879 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 SYCP1Q15431 976 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 CCDC14Q49A88 953 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 HSP90AA4PQ58FG1 418 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 FOXR1Q6PIV2 292 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 TRIM72Q6ZMU5 477 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 SLFN11Q7Z7L1 901 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 VPS36Q86VN1 386 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 PHACTR4Q8IZ21 702 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 OR6C4Q8NGE1 309 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 ATL2Q8NHH9 583 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 HCAR2Q8TDS4 363 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 ATXN7L3BQ96GX2 97 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 BOCQ9BWV1 1114 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 CAAP1Q9H8G2 361 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 ASCL3Q9NQ33 180 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 METTL5Q9NRN9 209 aaKnown RBP13.47□□□□□ -0.25
HMGB3-204ENST00000448905 DKK3Q9UBP4 350 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 GULP1Q9UBP9 304 aa13.47□□□□□ -0.25
HMGB3-204ENST00000448905 KLF15Q9UIH9 416 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms