RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 DEPDC7Q96QD5 511 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 EPAS1Q99814 870 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 C1QTNF2Q9BXJ5 285 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 TTYH3Q9C0H2 523 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 GANQ9H2C0 597 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 ZDHHC6Q9H6R6 413 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 NLRC4Q9NPP4 1024 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 ANLNQ9NQW6 1124 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 FANCLQ9NW38 375 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 DNAJC28Q9NX36 388 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 DKK3Q9UBP4 350 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 ZNF212Q9UDV6 495 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 LIMA1Q9UHB6 759 aaKnown RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 DNAI1Q9UI46 699 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 SALL4Q9UJQ4 1053 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 MYO6Q9UM54 1294 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 MFHAS1Q9Y4C4 1052 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 FADS3Q9Y5Q0 445 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 WASF2Q9Y6W5 498 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 CAPN8A6NHC0 703 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 C16orf96A6NNT2 1141 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 LGALS16A8MUM7 142 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 TK2O00142 265 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 BUB1O43683 1085 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 SDC3O75056 442 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 TM7SF2O76062 418 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 LRIG2O94898 1065 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 MBD3O95983 291 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 CSF2P04141 144 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 NME1P15531 152 aaKnown RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 XPAP23025 273 aaPredicted RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 NFKBIAP25963 317 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 HTR1BP28222 390 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 EPHB2P29323 1055 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 RFC1P35251 1148 aaPredicted RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 EIF2S3P41091 472 aaKnown RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 PEX5P50542 639 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 UCNP55089 124 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 POLR2LP62875 67 aaKnown RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 INSM1Q01101 510 aaPredicted RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 SEMG2Q02383 582 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 ACAP1Q15027 740 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 STX1AQ16623 288 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 CLEC16AQ2KHT3 1053 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 C15orf59Q2T9L4 293 aaPredicted RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 FILIP1LQ4L180 1135 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 C2CD6Q53TS8 623 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 CFAP58Q5T655 872 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 MANEALQ5VSG8 457 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 BROXQ5VW32 411 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 DNAJC24Q6P3W2 148 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 SCYL2Q6P3W7 929 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 DCUN1D2Q6PH85 259 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 WDR59Q6PJI9 974 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 GDPD4Q6W3E5 623 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 RBM43Q6ZSC3 357 aaKnown RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 NLRP14Q86W24 1093 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 EMC1Q8N766 993 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 RTL3Q8N8U3 475 aaKnown RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 SLC30A5Q8TAD4 765 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 GPT2Q8TD30 523 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 SLC20A1Q8WUM9 679 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 PTCD2Q8WV60 388 aaKnown RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 KLK6Q92876 244 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 BMFQ96LC9 184 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 ZNF578Q96N58 590 aaPredicted RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 ZNF641Q96N77 438 aaPredicted RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 ERGIC2Q96RQ1 377 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 UBL7Q96S82 380 aaPredicted RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 IL12RB2Q99665 862 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 AGPAT1Q99943 283 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 C11orf70Q9BRQ4 267 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 CNPY3Q9BT09 278 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 CPEB1Q9BZB8 566 aaKnown RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 SLC13A1Q9BZW2 595 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 LMBRD1Q9NUN5 540 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 SEPT11Q9NVA2 429 aaKnown RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 PARVAQ9NVD7 372 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 SPASTQ9UBP0 616 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 ZFR2Q9UPR6 939 aaKnown RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 FCF1Q9Y324 198 aaKnown RBP7.18□□□□□ -1.26
VPS41-208ENST00000448833 SNX10Q9Y5X0 201 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 LRRK1Q38SD2 2015 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 CACNA1GO43497 2377 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 LOC400499M0QZD8 3231 aa7.18□□□□□ -1.26
VPS41-208ENST00000448833 APC2O95996 2303 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 A0A1W2PQ67 120 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 CFAP69A5D8W1 941 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 POM121BA6NF01 834 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 IGLON5A6NGN9 336 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 SMTNL1A8MU46 457 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 WASH4PA8MWX3 477 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 TMX2-CTNND1H3BSU7 103 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 K7ESM1 405 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 TRIM38O00635 465 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 FFAR2O15552 330 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 AQP9O43315 295 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 OPA1O60313 960 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 TCEA3O75764 348 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 RNF8O76064 485 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms