RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 EPHA8P29322 1005 aaPredicted RBP4.43□□□□□ -1.7
VPS29-202ENST00000447578 IGHMBP2P38935 993 aaKnown RBP4.43□□□□□ -1.7
VPS29-202ENST00000447578 MLH1P40692 756 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 TMPOP42166 694 aaKnown RBP4.43□□□□□ -1.7
VPS29-202ENST00000447578 GPD2P43304 727 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 HARS2P49590 506 aaKnown RBP4.43□□□□□ -1.7
VPS29-202ENST00000447578 FOXL2P58012 376 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 RPS3AP61247 264 aaKnown RBP4.43□□□□□ -1.7
VPS29-202ENST00000447578 PSG6Q00889 435 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 PTP4A2Q12974 167 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 NAA25Q14CX7 972 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 PRICKLE4Q2TBC4 344 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 RUNDC3AQ59EK9 446 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 WDR93Q6P2C0 686 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 ACSM6Q6P461 480 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 C16orf89Q6UX73 402 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 KRT77Q7Z794 578 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 ANKRD23Q86SG2 305 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.43□□□□□ -1.7
VPS29-202ENST00000447578 RPAP2Q8IXW5 612 aaPredicted RBP4.43□□□□□ -1.7
VPS29-202ENST00000447578 ADSSL1Q8N142 457 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 ETNPPLQ8TBG4 499 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 METTL6Q8TCB7 284 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 CREB3L4Q8TEY5 395 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 CLEC4CQ8WTT0 213 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 NOC3LQ8WTT2 800 aaKnown RBP4.43□□□□□ -1.7
VPS29-202ENST00000447578 RUFY2Q8WXA3 655 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 USP6NLQ92738 828 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 PLEKHF1Q96S99 279 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 MPHOSPH8Q99549 860 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 CLPBQ9H078 707 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 FOXP1Q9H334 677 aaPredicted RBP4.43□□□□□ -1.7
VPS29-202ENST00000447578 MROH8Q9H579 483 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 SYNCQ9H7C4 482 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 TLR8Q9NR97 1041 aaKnown RBP4.43□□□□□ -1.7
VPS29-202ENST00000447578 TFCP2L1Q9NZI6 479 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 ADD3Q9UEY8 706 aaKnown RBP4.43□□□□□ -1.7
VPS29-202ENST00000447578 VPS4AQ9UN37 437 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 TNNQ9UQP3 1299 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 PCDHB2Q9Y5E7 798 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 A2ML1A8K2U0 1454 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 CD163L1Q9NR16 1453 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 ARHGEF40Q8TER5 1519 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 TMEM232C9JQI7 657 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 PTGES3LE9PB15 166 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 GRM8O00222 908 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 CES2O00748 559 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 P4HA2O15460 535 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 SPRY2O43597 315 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 SGPL1O95470 568 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 CLEC3BP05452 202 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 SPARCP09486 303 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 LAMP2P13473 410 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 ADRA1DP25100 572 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 GKP32189 559 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 COPB2P35606 906 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 RIPK4P57078 832 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 GHRHRQ02643 423 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 TLE3Q04726 772 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 DEUP1Q05D60 604 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 CDK18Q07002 472 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 DNASE1L3Q13609 305 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 WTAPQ15007 396 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 SPECC1Q5M775 1068 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 C10orf25Q5T742 122 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 MTHFD1LQ6UB35 978 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 KIAA1324Q6UXG2 1013 aaKnown RBP4.42□□□□□ -1.7
VPS29-202ENST00000447578 PXKQ7Z7A4 578 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 TTC39CQ8N584 583 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 SIRT6Q8N6T7 355 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.42□□□□□ -1.7
VPS29-202ENST00000447578 RFWD2Q8NHY2 731 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 KCNJ9Q92806 393 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 SH3KBP1Q96B97 665 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 NSUN4Q96CB9 384 aaKnown RBP4.42□□□□□ -1.7
VPS29-202ENST00000447578 RNFT2Q96EX2 444 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 TRMT61AQ96FX7 289 aaKnown RBP4.42□□□□□ -1.7
VPS29-202ENST00000447578 WDYHV1Q96HA8 205 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 PRR11Q96HE9 360 aaPredicted RBP4.42□□□□□ -1.7
VPS29-202ENST00000447578 AP1M1Q9BXS5 423 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 ITPAQ9BY32 194 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 PNNQ9H307 717 aaKnown RBP4.42□□□□□ -1.7
VPS29-202ENST00000447578 SAP30LQ9HAJ7 183 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 PCDHB16Q9NRJ7 776 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 PLSCR4Q9NRQ2 329 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 THAP1Q9NVV9 213 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 BEX4Q9NWD9 120 aaPredicted RBP4.42□□□□□ -1.7
VPS29-202ENST00000447578 REREQ9P2R6 1566 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 SLC25A10Q9UBX3 287 aaPredicted RBP4.42□□□□□ -1.7
VPS29-202ENST00000447578 CD207Q9UJ71 328 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 ZNF215Q9UL58 517 aaPredicted RBP4.42□□□□□ -1.7
VPS29-202ENST00000447578 NOL7Q9UMY1 257 aaKnown RBP4.42□□□□□ -1.7
VPS29-202ENST00000447578 CFAP65Q6ZU64 1925 aaKnown RBP4.42□□□□□ -1.7
VPS29-202ENST00000447578 MED14O60244 1454 aa4.42□□□□□ -1.7
VPS29-202ENST00000447578 DLC1Q96QB1 1528 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 SPATA31D1Q6ZQQ2 1576 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 CYP3A7-CYP3A51PA0A087WV96 503 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 hCG_1807616A0A1W2PRN6 198 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 GAGE10A6NGK3 116 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 FAM90A7PA6NKC0 464 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms