RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 GBA3Q9H227 469 aa15.98■□□□□ 0.15
USP40-206ENST00000443711 ZDHHC6Q9H6R6 413 aa15.98■□□□□ 0.15
USP40-206ENST00000443711 ATP13A3Q9H7F0 1226 aa15.98■□□□□ 0.15
USP40-206ENST00000443711 NOD2Q9HC29 1040 aa15.98■□□□□ 0.15
USP40-206ENST00000443711 PCDH9Q9HC56 1237 aa15.98■□□□□ 0.15
USP40-206ENST00000443711 IL36AQ9UHA7 158 aa15.98■□□□□ 0.15
USP40-206ENST00000443711 TTC24A2A3L6 582 aaPredicted RBP15.97■□□□□ 0.15
USP40-206ENST00000443711 ANXA9O76027 345 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 ETS1P14921 441 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 RPL22P35268 128 aaKnown RBP15.97■□□□□ 0.15
USP40-206ENST00000443711 PTGIRP43119 386 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 CXCL12P48061 93 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 BCL2L1Q07817 233 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 MTAPQ13126 283 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 PPP1R7Q15435 360 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 ARSIQ5FYB1 569 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 FAM46CQ5VWP2 391 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 MAATS1Q7Z4T9 603 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 FBXL6Q8N531 539 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 GLIS1Q8NBF1 620 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 ERLEC1Q96DZ1 483 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 CARD6Q9BX69 1037 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 OSBPL1AQ9BXW6 950 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 CD248Q9HCU0 757 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 POLR3BQ9NW08 1133 aaPredicted RBP15.97■□□□□ 0.15
USP40-206ENST00000443711 PPM1HQ9ULR3 514 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 WASF2Q9Y6W5 498 aa15.97■□□□□ 0.15
USP40-206ENST00000443711 TCRBV21S2A2A0A5A6 115 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 C1QTNF3-AMACRE9PGA6 284 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 PSMD3O43242 534 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 LEFTY1O75610 366 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 ALDH1A2O94788 518 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 ZSCAN5DPP0CG00 497 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 PSMB4P28070 264 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 SERPINA4P29622 427 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 FDFT1P37268 417 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 CD86P42081 329 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 CCR3P51677 355 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 GEMP55040 296 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 SKOR1P84550 965 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 SATB1Q01826 763 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 TRIP13Q15645 432 aaPredicted RBP15.96■□□□□ 0.15
USP40-206ENST00000443711 SLC14A2Q15849 920 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 ZNF776Q68DI1 518 aaPredicted RBP15.96■□□□□ 0.15
USP40-206ENST00000443711 GDPD4Q6W3E5 623 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 PRUNE1Q86TP1 453 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 PRPF39Q86UA1 669 aaKnown RBP15.96■□□□□ 0.15
USP40-206ENST00000443711 TMPRSS6Q8IU80 811 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 MMAAQ8IVH4 418 aaKnown RBP15.96■□□□□ 0.15
USP40-206ENST00000443711 MMGT1Q8N4V1 131 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 TSTD1Q8NFU3 115 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 PIP4K2CQ8TBX8 421 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 GRIN3AQ8TCU5 1115 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 CCHCR1Q8TD31 782 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 ZNF641Q96N77 438 aaPredicted RBP15.96■□□□□ 0.15
USP40-206ENST00000443711 RBM15Q96T37 977 aaKnown RBP eCLIP15.96■□□□□ 0.15
USP40-206ENST00000443711 VPS45Q9NRW7 570 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 FAM153AQ9UHL3 310 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 AAR2Q9Y312 384 aaKnown RBP15.96■□□□□ 0.15
USP40-206ENST00000443711 NEU2Q9Y3R4 380 aa15.96■□□□□ 0.15
USP40-206ENST00000443711 GOLGA6CA6NDK9 693 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 GOLGA6BA6NDN3 693 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 FAM187AA6NFU0 413 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 SOCS5O75159 536 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 GJB3O75712 270 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 METTL18O95568 372 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 ADH1BP00325 375 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 IL1BP01584 269 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 CTSLP07711 333 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 MMP2P08253 660 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 GOLGA6DP0CG33 693 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 CA4P22748 312 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 GKP32189 559 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 COPAP53621 1224 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 RPS14P62263 151 aaKnown RBP15.95■□□□□ 0.14
USP40-206ENST00000443711 PTK6Q13882 451 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 CST6Q15828 149 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 JAMLQ86YT9 394 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 CAMK1DQ8IU85 385 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 SPATA22Q8NHS9 363 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 PRCCQ92733 491 aaPredicted RBP15.95■□□□□ 0.14
USP40-206ENST00000443711 TADA1Q96BN2 335 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 SUV39H2Q9H5I1 410 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 RAB6BQ9NRW1 208 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 SPATA6Q9NWH7 488 aaPredicted RBP15.95■□□□□ 0.14
USP40-206ENST00000443711 C2orf42Q9NWW7 574 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 GOLGA6AQ9NYA3 693 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 PCDHGC4Q9Y5F7 938 aa15.95■□□□□ 0.14
USP40-206ENST00000443711 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.94■□□□□ 0.14
USP40-206ENST00000443711 A0A1W2PQ67 120 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 F5H423 210 aaPredicted RBP15.94■□□□□ 0.14
USP40-206ENST00000443711 KPNA3O00505 521 aaPredicted RBP15.94■□□□□ 0.14
USP40-206ENST00000443711 TTI1O43156 1089 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 PAPSS2O95340 614 aaPredicted RBP15.94■□□□□ 0.14
USP40-206ENST00000443711 PIGNO95427 931 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 MT-CYBP00156 380 aaPredicted RBP15.94■□□□□ 0.14
USP40-206ENST00000443711 DNTTP04053 509 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 UGT2B4P06133 528 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 C7P10643 843 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 SLC8A1P32418 973 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms