RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 NDUFB8O95169 186 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 BDNFP23560 247 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 CDC25AP30304 524 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 ALDH7A1P49419 539 aaKnown RBP3.72□□□□□ -1.81
VPS41-207ENST00000439468 EIF5P55010 431 aaKnown RBP3.72□□□□□ -1.81
VPS41-207ENST00000439468 CYP4A11Q02928 519 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 GAD2Q05329 585 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 SRSF1Q07955 248 aaKnown RBP eCLIP3.72□□□□□ -1.81
VPS41-207ENST00000439468 NEXNQ0ZGT2 675 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 ERV3-1Q14264 604 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 LEXMQ3ZCV2 418 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 LCE1AQ5T7P2 110 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 SNX30Q5VWJ9 437 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 NUGGCQ68CJ6 796 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 ZNF549Q6P9A3 640 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 TMTC3Q6ZXV5 915 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 TADA2BQ86TJ2 420 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 LURAP1LQ8IV03 231 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 CADM3Q8N126 398 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 TMEM199Q8N511 208 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 SLC44A5Q8NCS7 719 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 OR4N2Q8NGD1 307 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 TEFMQ96QE5 360 aaKnown RBP3.72□□□□□ -1.81
VPS41-207ENST00000439468 PDCL3Q9H2J4 239 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 ACTR5Q9H9F9 607 aaPredicted RBP3.72□□□□□ -1.81
VPS41-207ENST00000439468 PLEKHA5Q9HAU0 1116 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 WDR6Q9NNW5 1121 aaKnown RBP3.72□□□□□ -1.81
VPS41-207ENST00000439468 ENTPD7Q9NQZ7 604 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 THSD1Q9NS62 852 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 KRT84Q9NSB2 600 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 C20orf141Q9NUB4 165 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 MSRB1Q9NZV6 116 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 MKLN1Q9UL63 735 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 RAP2CQ9Y3L5 183 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 PCDHGB5Q9Y5G0 923 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 CLDN16Q9Y5I7 305 aa3.72□□□□□ -1.81
VPS41-207ENST00000439468 ITIH6Q6UXX5 1313 aa3.71□□□□□ -1.81
VPS41-207ENST00000439468 TMEM272A0A1B0GTI8 110 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 ARHGAP10A1A4S6 786 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 PI4KAP2A4QPH2 592 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 ZNF814B7Z6K7 855 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 GFPT2O94808 682 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 ALPLP05186 524 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 SPARCP09486 303 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 FMO4P31512 558 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 TNFSF8P32971 234 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 SLC16A2P36021 539 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 CXCR3P49682 368 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 CTCFP49711 727 aaPredicted RBP3.71□□□□□ -1.82
VPS41-207ENST00000439468 HTR6P50406 440 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 CLDN2P57739 230 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 RPS3AP61247 264 aaKnown RBP3.71□□□□□ -1.82
VPS41-207ENST00000439468 SLC18A2Q05940 514 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 PPATQ06203 517 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 TMEM115Q12893 351 aaPredicted RBP3.71□□□□□ -1.82
VPS41-207ENST00000439468 MED22Q15528 200 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 INPP5JQ15735 1006 aaPredicted RBP3.71□□□□□ -1.82
VPS41-207ENST00000439468 ALG10Q5BKT4 473 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 ALG10BQ5I7T1 473 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 PIK3CD-AS1Q5SR53 167 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 NAA35Q5VZE5 725 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 RUSC1-AS1Q66K80 236 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 LRRC8EQ6NSJ5 796 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 TMEM71Q6P5X7 295 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 INO80CQ6PI98 192 aaPredicted RBP3.71□□□□□ -1.82
VPS41-207ENST00000439468 PXKQ7Z7A4 578 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 FAM217AQ8IXS0 508 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 SLC25A41Q8N5S1 370 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 HDAC7Q8WUI4 952 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 KLHL29Q96CT2 875 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 WDFY2Q96P53 400 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 ITPAQ9BY32 194 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 LHPPQ9H008 270 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 ZBTB40Q9NUA8 1239 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 PPP1R14DQ9NXH3 145 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 TERF2IPQ9NYB0 399 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 KIAA1456Q9P272 454 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 TBC1D14Q9P2M4 693 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 AGO2Q9UKV8 859 aaKnown RBP3.71□□□□□ -1.82
VPS41-207ENST00000439468 CAPN7Q9Y6W3 813 aa3.71□□□□□ -1.82
VPS41-207ENST00000439468 DYTNA2CJ06 578 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 TMEM247A6NEH6 219 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 CBY3A6NI87 242 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 HSPB6O14558 160 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 PRPF4O43172 522 aaKnown RBP eCLIP3.7□□□□□ -1.82
VPS41-207ENST00000439468 TMEM63AO94886 807 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 TOMM40O96008 361 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 UNGP13051 313 aaPredicted RBP3.7□□□□□ -1.82
VPS41-207ENST00000439468 SLC2A4P14672 509 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 ABCD1P33897 745 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 PBX3P40426 434 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 CDKN2AP42771 156 aaKnown RBP3.7□□□□□ -1.82
VPS41-207ENST00000439468 CLCN5P51795 746 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 CLCNKBP51801 687 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 SETQ01105 290 aaPredicted RBP3.7□□□□□ -1.82
VPS41-207ENST00000439468 GRIK3Q13003 919 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 CAPSQ13938 189 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 TAF11Q15544 211 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 ODF3L2Q3SX64 289 aa3.7□□□□□ -1.82
VPS41-207ENST00000439468 TTC39AQ5SRH9 613 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms