RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 RHOAP61586 193 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 HNRNPKP61978 463 aaKnown RBP eCLIP17.33■□□□□ 0.36
TRIM39-209ENST00000428728 COL9A2Q14055 689 aaPredicted RBP17.33■□□□□ 0.36
TRIM39-209ENST00000428728 FZD2Q14332 565 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 NCAPHQ15003 741 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 MYLK3Q32MK0 819 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 APTXQ7Z2E3 356 aaKnown RBP17.33■□□□□ 0.36
TRIM39-209ENST00000428728 PARGQ86W56 976 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 DCP2Q8IU60 420 aaKnown RBP17.33■□□□□ 0.36
TRIM39-209ENST00000428728 RAB7BQ96AH8 199 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 IFT43Q96FT9 208 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 HMCESQ96FZ2 354 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 CRELD1Q96HD1 420 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 EPAS1Q99814 870 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 OSBPL1AQ9BXW6 950 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 HSD3B7Q9H2F3 369 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 NLGN3Q9NZ94 848 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 IPO11Q9UI26 975 aaKnown RBP17.33■□□□□ 0.36
TRIM39-209ENST00000428728 RASA4BC9J798 803 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 H3BM21 787 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 ATMINO43313 823 aaPredicted RBP17.32■□□□□ 0.36
TRIM39-209ENST00000428728 RASA4O43374 803 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 POP4O95707 220 aaKnown RBP17.32■□□□□ 0.36
TRIM39-209ENST00000428728 IGSF6O95976 241 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 FERP16591 822 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 PDE1CQ14123 709 aaPredicted RBP17.32■□□□□ 0.36
TRIM39-209ENST00000428728 TPRG1LQ5T0D9 272 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 CCDC183Q5T5S1 534 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 DCUN1D2Q6PH85 259 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 GDPD4Q6W3E5 623 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 ZSCAN30Q86W11 494 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 ZNF548Q8NEK5 533 aaPredicted RBP17.32■□□□□ 0.36
TRIM39-209ENST00000428728 RFFLQ8WZ73 363 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 BAP1Q92560 729 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 VOPP1Q96AW1 172 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 ARHGEF26Q96DR7 871 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 EXOC2Q96KP1 924 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 APOLD1Q96LR9 279 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 KLF6Q99612 283 aaPredicted RBP17.32■□□□□ 0.36
TRIM39-209ENST00000428728 CNPY3Q9BT09 278 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 C1QTNF2Q9BXJ5 285 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 GPATCH2LQ9NWQ4 482 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 FZD10Q9ULW2 581 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 ASXL3Q9C0F0 2248 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 RP1P56715 2156 aa17.32■□□□□ 0.36
TRIM39-209ENST00000428728 A0A087WV48 116 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 SPTY2D1-AS1A0A0U1RR47 76 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 NEMP2A6NFY4 417 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 TMCO5BA8MYB1 307 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 TLX3O43711 291 aaPredicted RBP17.31■□□□□ 0.36
TRIM39-209ENST00000428728 CKMT1AP12532 417 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 NME1P15531 152 aaKnown RBP17.31■□□□□ 0.36
TRIM39-209ENST00000428728 IGFALSP35858 605 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 ABCG1P45844 678 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 E2F1Q01094 437 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 OGDHQ02218 1023 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 RAD51Q06609 339 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 TTC7BQ86TV6 843 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 VPS36Q86VN1 386 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 MCOLN2Q8IZK6 566 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 DENND6BQ8NEG7 585 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 NCAPGQ9BPX3 1015 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 TTYH3Q9C0H2 523 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 NRSN2Q9GZP1 204 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 CATSPERBQ9H7T0 1116 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 TAS2R14Q9NYV8 317 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 LAMA5O15230 3695 aa17.31■□□□□ 0.36
TRIM39-209ENST00000428728 LY6G6EA0A0G2JKS1 128 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 K7ESM1 405 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 AREL1O15033 823 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 SCAMP1O15126 338 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 INSIG1O15503 277 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 BRINP1O60477 761 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 PIGNO95427 931 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 MT-CO3P00414 261 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 CSF2P04141 144 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 JUNDP17535 347 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 DESP17661 470 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 ITIH2P19823 946 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 TPI1P60174 286 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 TYRO3Q06418 890 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 RTP5Q14D33 572 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 PPP1R15BQ5SWA1 713 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 ACAD10Q6JQN1 1059 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 DCBLD1Q8N8Z6 715 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 CXorf40AQ8TE69 158 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 LENG8Q96PV6 779 aaPredicted RBP17.3■□□□□ 0.36
TRIM39-209ENST00000428728 WRAP53Q9BUR4 548 aaKnown RBP17.3■□□□□ 0.36
TRIM39-209ENST00000428728 LHX3Q9UBR4 397 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 KLF15Q9UIH9 416 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 PCDHB1Q9Y5F3 818 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 U3KQA8 63 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 ITPR1Q14643 2758 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 KIF26BQ2KJY2 2108 aa17.3■□□□□ 0.36
TRIM39-209ENST00000428728 NBEAQ8NFP9 2946 aa17.29■□□□□ 0.36
TRIM39-209ENST00000428728 LRRC10BA6NIK2 292 aa17.29■□□□□ 0.36
TRIM39-209ENST00000428728 TEX33O43247 280 aa17.29■□□□□ 0.36
TRIM39-209ENST00000428728 AQP9O43315 295 aa17.29■□□□□ 0.36
TRIM39-209ENST00000428728 OPA1O60313 960 aa17.29■□□□□ 0.36
TRIM39-209ENST00000428728 MMP20O60882 483 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms