RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ACRP10323 421 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 MLNP12872 115 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 SERPINB9P50453 376 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 CREB5Q02930 508 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 TAF12Q16514 161 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 C1orf146Q5VVC0 180 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 CYS1Q717R9 158 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 WDR75Q8IWA0 830 aaKnown RBP8.47□□□□□ -1.05
CD44-208ENST00000428726 TRIM42Q8IWZ5 723 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 LGI2Q8N0V4 545 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 SLC26A7Q8TE54 656 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 SOCS4Q8WXH5 440 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 INPP5DQ92835 1189 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 NT5C3BQ969T7 300 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 RMDN1Q96DB5 314 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 SEMA3CQ99985 751 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 SLC39A3Q9BRY0 314 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 LRRC40Q9H9A6 602 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 MARCH2Q9P0N8 246 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 TRIM17Q9Y577 477 aa8.47□□□□□ -1.05
CD44-208ENST00000428726 SF3B1O75533 1304 aaKnown RBP eCLIP8.46□□□□□ -1.058e-6■■■■■ 107
CD44-208ENST00000428726 KLF11O14901 512 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 IL1BP01584 269 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 ENO3P13929 434 aaPredicted RBP8.46□□□□□ -1.05
CD44-208ENST00000428726 WEE1P30291 646 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 GP5P40197 560 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 RGRP47804 291 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 GRIA4P48058 902 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 KCNC1P48547 511 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 SLC11A1P49279 550 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 NSUN2Q08J23 767 aaKnown RBP eCLIP8.46□□□□□ -1.05
CD44-208ENST00000428726 FOXD4Q12950 439 aaPredicted RBP8.46□□□□□ -1.05
CD44-208ENST00000428726 ARL13AQ5H913 290 aaPredicted RBP8.46□□□□□ -1.05
CD44-208ENST00000428726 MBLAC2Q68D91 279 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 FSTL5Q8N475 847 aaPredicted RBP8.46□□□□□ -1.05
CD44-208ENST00000428726 ANKRD49Q8WVL7 239 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 STMN2Q93045 179 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 TMA16Q96EY4 203 aaKnown RBP8.46□□□□□ -1.05
CD44-208ENST00000428726 CAPNS2Q96L46 248 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 SLC22A12Q96S37 553 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 TBL1YQ9BQ87 522 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 LRMDAQ9H2I8 198 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 ALG9Q9H6U8 611 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 FBRSL1Q9HCM7 1045 aaKnown RBP8.46□□□□□ -1.05
CD44-208ENST00000428726 MKS1Q9NXB0 559 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 COPG2Q9UBF2 871 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 ZDHHC2Q9UIJ5 367 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 DSEQ9UL01 958 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 GIT1Q9Y2X7 761 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 FRYLO94915 3013 aa8.46□□□□□ -1.05
CD44-208ENST00000428726 C2orf78A6NCI8 922 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 ERI2A8K979 691 aaKnown RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 TLR5O60602 858 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 SNAP91O60641 907 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 HNRNPCL1O60812 293 aaKnown RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 ZNF189O75820 626 aaPredicted RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 CTPS1P17812 591 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 CNTFP26441 200 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 CCNFP41002 786 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 OCRLQ01968 901 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 PPIDQ08752 370 aaKnown RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 GPR158Q5T848 1215 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 LPCAT4Q643R3 524 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 TPGS1Q6ZTW0 290 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 BNIPLQ7Z465 357 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 RNF180Q86T96 592 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 DEFB107AQ8IZN7 70 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 PCDH20Q8N6Y1 951 aaKnown RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 OR9I1Q8NGQ6 314 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 ZNF483Q8TF39 744 aaPredicted RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 SORT1Q99523 831 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 OLFM1Q99784 485 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 ACBD6Q9BR61 282 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 NOL6Q9H6R4 1146 aaKnown RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 NMRAL1Q9HBL8 299 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 ZDHHC4Q9NPG8 344 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 SAR1AQ9NR31 198 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 EIF2B3Q9NR50 452 aaKnown RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 V9GYQ6 96 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 ATG2BQ96BY7 2078 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 A0A1W2PQ45 241 aaPredicted RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 A0A1W2PQ67 120 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 A0A1W2PQY0 241 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 K7ERQ8 282 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 TXNDC9O14530 226 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 NVLO15381 856 aaKnown RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 FBXO21O94952 628 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 CCDC166P0CW27 439 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 NELFEP18615 380 aaKnown RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 GLUD2P49448 558 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 AIF1P55008 147 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 SLC12A2P55011 1212 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 MGAT3Q09327 533 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 PLD1Q13393 1074 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 PAFAH1B3Q15102 231 aaKnown RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 MS4A13Q5J8X5 152 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 ATG16L1Q676U5 607 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 KBTBD2Q8IY47 623 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 TDRD5Q8NAT2 981 aaKnown RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 PIWIL2Q8TC59 973 aaKnown RBP8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms