RNA–Protein interactions for RNA: ENST00000428599.6

CTNND1-208, Transcript of catenin delta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNND1, Length 6,016 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-208ENST00000428599 NECTIN3Q9NQS3 549 aa9.02□□□□□ -0.96
CTNND1-208ENST00000428599 KLQ9UEF7 1012 aa9.02□□□□□ -0.96
CTNND1-208ENST00000428599 PHF11Q9UIL8 331 aa9.02□□□□□ -0.96
CTNND1-208ENST00000428599 A0A096LPK6 155 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 FAM58BPP0C7Q3 252 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 GIMD1P0DJR0 217 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 NR2F1P10589 423 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 BMP7P18075 431 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 CDK7P50613 346 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 HYIQ5T013 277 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 AFTPHQ6ULP2 937 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 ZPBP2Q6X784 338 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 ZC3H7AQ8IWR0 971 aaKnown RBP9.02□□□□□ -0.97
CTNND1-208ENST00000428599 PEX5LQ8IYB4 626 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 ZBTB45Q96K62 511 aaPredicted RBP9.02□□□□□ -0.97
CTNND1-208ENST00000428599 SHOC2Q9UQ13 582 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 YDJCA8MPS7 323 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 ASNA1O43681 348 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 APODP05090 189 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 SP100P23497 879 aaPredicted RBP9.02□□□□□ -0.97
CTNND1-208ENST00000428599 OMPP47874 163 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 CDH8P55286 799 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 NAA30Q147X3 362 aaPredicted RBP9.02□□□□□ -0.97
CTNND1-208ENST00000428599 STK32CQ86UX6 486 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 ZNF563Q8TA94 476 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 ELMO3Q96BJ8 720 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 RPS6KA6Q9UK32 745 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.02□□□□□ -0.97
CTNND1-208ENST00000428599 RECQL5O94762 991 aaPredicted RBP9.02□□□□□ -0.97
CTNND1-208ENST00000428599 CLPTM1O96005 669 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 FRG1Q14331 258 aaKnown RBP9.02□□□□□ -0.97
CTNND1-208ENST00000428599 PTGES3Q15185 160 aaKnown RBP9.02□□□□□ -0.97
CTNND1-208ENST00000428599 STXBP5Q5T5C0 1151 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 MZT2BQ6NZ67 158 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 MTDHQ86UE4 582 aaKnown RBP9.02□□□□□ -0.97
CTNND1-208ENST00000428599 ADHFE1Q8IWW8 467 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 STAG3L4Q8TBR4 150 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 UBASH3BQ8TF42 649 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 SNRNP27Q8WVK2 155 aaKnown RBP9.02□□□□□ -0.97
CTNND1-208ENST00000428599 HIC2Q96JB3 615 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 SENP8Q96LD8 212 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 C9orf16Q9BUW7 83 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 SLC4A5Q9BY07 1137 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 BRD9Q9H8M2 597 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 GULP1Q9UBP9 304 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 VPS4AQ9UN37 437 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 BTBD3Q9Y2F9 522 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 NRCAMQ92823 1304 aa9.02□□□□□ -0.97
CTNND1-208ENST00000428599 NQO1P15559 274 aaKnown RBP9.01□□□□□ -0.97
CTNND1-208ENST00000428599 GPD2P43304 727 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 CBX5P45973 191 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 RAB2AP61019 212 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 MRPS6P82932 125 aaKnown RBP9.01□□□□□ -0.97
CTNND1-208ENST00000428599 ACAP1Q15027 740 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 POM121L1PQ3SYA9 428 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 FAM124AQ86V42 546 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 ACTL9Q8TC94 416 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 SLC25A23Q9BV35 468 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 CDC42EP4Q9H3Q1 356 aaKnown RBP9.01□□□□□ -0.97
CTNND1-208ENST00000428599 SLC40A1Q9NP59 571 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 VPS45Q9NRW7 570 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 CLN6Q9NWW5 311 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 ENO4A6NNW6 628 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 STX16-NPEPL1H3BU86 382 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 STX16O14662 325 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TFPIP10646 304 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 ZNF846Q147U1 533 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 SMU1Q2TAY7 513 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 NOMO2Q5JPE7 1267 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TATDN1Q6P1N9 297 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 KDM7AQ6ZMT4 941 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 ZDHHC13Q8IUH4 622 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 MCOLN2Q8IZK6 566 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 BEND7Q8N7W2 519 aaPredicted RBP9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TSPAN14Q8NG11 270 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 IPCEF1Q8WWN9 437 aaPredicted RBP9.01□□□□□ -0.97
CTNND1-208ENST00000428599 MTMR9Q96QG7 549 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 SEMA4BQ9NPR2 832 aaPredicted RBP9.01□□□□□ -0.97
CTNND1-208ENST00000428599 CASZ1Q86V15 1759 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TBC1D3DA0A087WVF3 549 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TBC1D3IA0A087WXS9 549 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TBC1D3EA0A087X179 549 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TBC1D3KA0A087X1G2 549 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TBC1D3FA6NER0 549 aaPredicted RBP9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TMEM88BA6NKF7 163 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TBC1D3LB9A6J9 549 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 CLOCKO15516 846 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TOP3BO95985 862 aaKnown RBP9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TBC1D3HP0C7X1 549 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 SMIM10L2AP0DMW4 78 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 SMIM10L2BP0DMW5 78 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 PTPN1P18031 435 aaKnown RBP9.01□□□□□ -0.97
CTNND1-208ENST00000428599 CDC25CP30307 473 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 GRB14Q14449 540 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 NR1D2Q14995 579 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 NDUFA9Q16795 377 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TBC1D3GQ6DHY5 549 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 TBC1D3CQ6IPX1 549 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 KCNK18Q7Z418 384 aa9.01□□□□□ -0.97
CTNND1-208ENST00000428599 DENND1CQ8IV53 801 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms