RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 BDNFP23560 247 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ITGA3P26006 1051 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SPIRE1Q08AE8 756 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 FCHO2Q0JRZ9 810 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 DLG1Q12959 904 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ORC1Q13415 861 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 LY6KQ17RY6 165 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 KYAT3Q6YP21 454 aaKnown RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 NIPA1Q7RTP0 329 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SNX20Q7Z614 316 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 OR10G6Q8NH81 332 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SYTL5Q8TDW5 730 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 IPCEF1Q8WWN9 437 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 RIPOR3Q96MK2 946 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ERGIC2Q96RQ1 377 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 APBA2Q99767 749 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TMEM121Q9BTD3 319 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ZYG11BQ9C0D3 744 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 PLEKHA1Q9HB21 404 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 MCUBQ9NWR8 336 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ALKBH4Q9NXW9 302 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 CNTNAP5Q8WYK1 1306 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SGPL1O95470 568 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 CXCL8P10145 99 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SLC6A2P23975 617 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SLC26A3P40879 764 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 KCNJ1P48048 391 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 GYS2P54840 703 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 MRPS6P82932 125 aaKnown RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 PUDPQ08623 228 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ZNF470Q6ECI4 717 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ZCCHC12Q6PEW1 402 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 APOL2Q9BQE5 337 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 C1orf50Q9BV19 199 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 CDH9Q9ULB4 789 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 USP42Q9H9J4 1324 aaKnown RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 PDE5AO76074 875 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 IFNA6P05013 189 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ERVK-21P61565 698 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 CDK16Q00536 496 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 PFKPQ01813 784 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 CERCAMQ5T4B2 595 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TXNDC11Q6PKC3 985 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TIFAQ96CG3 184 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 PAFAH2Q99487 392 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 KLF6Q99612 283 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 FNDC11Q9BVV2 318 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 IQGAP1P46940 1657 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 FAM86C2PA6NEL3 165 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 CCDC182A6NF36 153 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 GRXCR2A6NFK2 248 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 CAMTA2O94983 1202 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 HMGCRP04035 888 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 SERPINE1P05121 402 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 PPIBP23284 216 aaKnown RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 AP1S1P61966 158 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 IRF8Q02556 426 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 GIT2Q14161 759 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 DEFB115Q30KQ5 88 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 XKR6Q5GH73 641 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 ATAT1Q5SQI0 421 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 CCNI2Q6ZMN8 369 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 METTL16Q86W50 562 aaKnown RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 UBR7Q8N806 425 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 RNF145Q96MT1 663 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 EBNA1BP2Q99848 306 aaKnown RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 RHOBTB2Q9BYZ6 727 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 SAMD4AQ9UPU9 718 aaKnown RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 HEBP2Q9Y5Z4 205 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 A0A1W2PQ67 120 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 DDX3XO00571 662 aaKnown RBP eCLIP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 SCN2BO60939 215 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 ENTPD5O75356 428 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 EPHA10Q5JZY3 1008 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 SPOCD1Q6ZMY3 1216 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 ATG14Q6ZNE5 492 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 SLC47A2Q86VL8 602 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 FAM81AQ8TBF8 368 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 DLGAP2Q9P1A6 1054 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 KIAA1522Q9P206 1035 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 GLS2Q9UI32 602 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 PHGDHO43175 533 aaKnown RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 TNFAIP8O95379 198 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 CXCL14O95715 111 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 FAM58BPP0C7Q3 252 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 PTPN9P43378 593 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 CPA2P48052 419 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 NOMO2Q5JPE7 1267 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 STXBP5Q5T5C0 1151 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 FIP1L1Q6UN15 594 aaKnown RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 ZPBP2Q6X784 338 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 OR2L5Q8NG80 312 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 HIC2Q96JB3 615 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 PPP3R2Q96LZ3 170 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 CATSPER2Q96P56 530 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 CELF4Q9BZC1 486 aaKnown RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 CDH7Q9ULB5 785 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 SHOC2Q9UQ13 582 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 PCDHA11Q9Y5I1 949 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms