RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 NUMBLQ9Y6R0 609 aa15.02■□□□□ -0
USP4-203ENST00000415188 SHROOM3Q8TF72 1996 aa15.02■□□□□ -0
USP4-203ENST00000415188 PIEZO1Q92508 2521 aa15.02□□□□□ -0.01
USP4-203ENST00000415188 CAPN14A8MX76 684 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 F5H423 210 aaPredicted RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 I6L893 689 aaPredicted RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 GYG2O15488 501 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 PEX11AO75192 247 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 LRIG2O94898 1065 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 PAPLNO95428 1278 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 GSRP00390 522 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 SERPINA6P08185 405 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 FGF3P11487 239 aaPredicted RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 MYL4P12829 197 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 CCNCP24863 283 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 TYK2P29597 1187 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 CD68P34810 354 aaPredicted RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 BRCC3P46736 316 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 NRG1Q02297 640 aaPredicted RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 CDH17Q12864 832 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 EIF4EBP2Q13542 120 aaPredicted RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 C4orf50Q6ZRC1 276 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 LRRC49Q8IUZ0 686 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 UNC5BQ8IZJ1 945 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 DNAAF3Q8N9W5 541 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 GIMAP7Q8NHV1 300 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 PPP4R1Q8TF05 950 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 RSRC1Q96IZ7 334 aaKnown RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 MLPHQ9BV36 600 aaPredicted RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 CADM1Q9BY67 442 aaKnown RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 CEP41Q9BYV8 373 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 PRKD2Q9BZL6 878 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 FBXO6Q9NRD1 293 aaPredicted RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 ABCC13Q9NSE7 274 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 ZDHHC7Q9NXF8 308 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 AAR2Q9Y312 384 aaKnown RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 VWA8A3KMH1 1905 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 ZCWPW2A0A1B0GU75 182 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 ARHGAP42A6NI28 874 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 TMEM189-UBE2V1I3L0A0 370 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 GSC2O15499 205 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 IRAK2O43187 625 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 C1RP00736 705 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 APOA4P06727 396 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 ERVK-10P10266 1014 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 NFKB1P19838 968 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 FGFR3P22607 806 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 BDNFP23560 247 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 AQP5P55064 265 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 ELAVL2Q12926 359 aaKnown RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 ZBTB17Q13105 803 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 TDGQ13569 410 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 TEDDM1Q5T9Z0 273 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 OVOS1Q6IE37 1185 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 TLDC1Q6P9B6 456 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 RSPO2Q6UXX9 243 aaPredicted RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 GET4Q7L5D6 327 aaPredicted RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 PIWIL2Q8TC59 973 aaKnown RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 PTCD2Q8WV60 388 aaKnown RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 EDEM1Q92611 657 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 RNF34Q969K3 372 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 FCRL3Q96P31 734 aaPredicted RBP15.01□□□□□ -0.01
USP4-203ENST00000415188 MIPEPQ99797 713 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 NMUR2Q9GZQ4 415 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 CATSPERBQ9H7T0 1116 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 DCLRE1BQ9H816 532 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 SNX15Q9NRS6 342 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 TAGLN3Q9UI15 199 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 PCDHB8Q9UN66 801 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 ANKRD6Q9Y2G4 727 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 L3MBTL1Q9Y468 752 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 PSAT1Q9Y617 370 aa15.01□□□□□ -0.01
USP4-203ENST00000415188 MTCL1Q9Y4B5 1905 aaKnown RBP15□□□□□ -0.01
USP4-203ENST00000415188 NARSO43776 548 aaKnown RBP15□□□□□ -0.01
USP4-203ENST00000415188 MAGEC1O60732 1142 aa15□□□□□ -0.01
USP4-203ENST00000415188 ANXA9O76027 345 aa15□□□□□ -0.01
USP4-203ENST00000415188 ALOX15P16050 662 aaPredicted RBP15□□□□□ -0.01
USP4-203ENST00000415188 SLC1A6P48664 564 aa15□□□□□ -0.01
USP4-203ENST00000415188 POLD2P49005 469 aa15□□□□□ -0.01
USP4-203ENST00000415188 PRKAA2P54646 552 aa15□□□□□ -0.01
USP4-203ENST00000415188 PTPN5P54829 565 aa15□□□□□ -0.01
USP4-203ENST00000415188 PPP2R5DQ14738 602 aa15□□□□□ -0.01
USP4-203ENST00000415188 PCLAFQ15004 111 aa15□□□□□ -0.01
USP4-203ENST00000415188 DNAL1Q4LDG9 190 aa15□□□□□ -0.01
USP4-203ENST00000415188 CMPK2Q5EBM0 449 aa15□□□□□ -0.01
USP4-203ENST00000415188 CES4AQ5XG92 561 aa15□□□□□ -0.01
USP4-203ENST00000415188 PDPK2PQ6A1A2 396 aa15□□□□□ -0.01
USP4-203ENST00000415188 STRA8Q7Z7C7 330 aa15□□□□□ -0.01
USP4-203ENST00000415188 TP53INP2Q8IXH6 220 aa15□□□□□ -0.01
USP4-203ENST00000415188 DCLK2Q8N568 766 aa15□□□□□ -0.01
USP4-203ENST00000415188 TEX9Q8N6V9 391 aa15□□□□□ -0.01
USP4-203ENST00000415188 TMEM105Q8N8V8 129 aa15□□□□□ -0.01
USP4-203ENST00000415188 ST13P5Q8NFI4 369 aaPredicted RBP15□□□□□ -0.01
USP4-203ENST00000415188 MCUR1Q96AQ8 359 aa15□□□□□ -0.01
USP4-203ENST00000415188 FCRL5Q96RD9 977 aa15□□□□□ -0.01
USP4-203ENST00000415188 KIFC1Q9BW19 673 aa15□□□□□ -0.01
USP4-203ENST00000415188 DNAJC28Q9NX36 388 aa15□□□□□ -0.01
USP4-203ENST00000415188 COPG2Q9UBF2 871 aa15□□□□□ -0.01
USP4-203ENST00000415188 PPARGC1AQ9UBK2 798 aaKnown RBP15□□□□□ -0.01
USP4-203ENST00000415188 MTRRQ9UBK8 725 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms