RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 GLRX5Q86SX6 157 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 VPS36Q86VN1 386 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 RHBDD1Q8TEB9 315 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 GDAP1L1Q96MZ0 367 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 EIF3CQ99613 913 aaKnown RBP19.33■□□□□ 0.68
SF3A1-202ENST00000411423 CHP1Q99653 195 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 SCNM1Q9BWG6 230 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 TMEM121BQ9BXQ6 578 aaPredicted RBP19.33■□□□□ 0.68
SF3A1-202ENST00000411423 WDFY3Q8IZQ1 3526 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 CBFA2T2O43439 604 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 AP1G1O43747 822 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 FTH1P19P0C7X4 201 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 NUDT1P36639 197 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 HCAR3P49019 387 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 ADKP55263 362 aaKnown RBP19.32■□□□□ 0.68
SF3A1-202ENST00000411423 MAPK8IP2Q13387 824 aaPredicted RBP19.32■□□□□ 0.68
SF3A1-202ENST00000411423 PIGHQ14442 188 aaPredicted RBP19.32■□□□□ 0.68
SF3A1-202ENST00000411423 ATP13A4Q4VNC1 1196 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 GDPD4Q6W3E5 623 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 KANSL1Q7Z3B3 1105 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 CHCHD4Q8N4Q1 142 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 SAP25Q8TEE9 199 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 CASKIN2Q8WXE0 1202 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 LRIG1Q96JA1 1093 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 BMFQ96LC9 184 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 PCDH18Q9HCL0 1135 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 GDF3Q9NR23 364 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.32■□□□□ 0.68
SF3A1-202ENST00000411423 KLK13Q9UKR3 277 aa19.32■□□□□ 0.68
SF3A1-202ENST00000411423 AKAP13Q12802 2813 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 DFFAO00273 331 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 AREL1O15033 823 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 MUSKO15146 869 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 DAPK3O43293 454 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 BUB1BO60566 1050 aaPredicted RBP19.31■□□□□ 0.68
SF3A1-202ENST00000411423 IGSF6O95976 241 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 CD48P09326 243 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 ATXN1LP0C7T5 689 aaKnown RBP19.31■□□□□ 0.68
SF3A1-202ENST00000411423 TIMP2P16035 220 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 HNRNPA2B1P22626 353 aaKnown RBP19.31■□□□□ 0.68
SF3A1-202ENST00000411423 IL4RP24394 825 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 ARSEP51690 589 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 HNRNPDQ14103 355 aaKnown RBP19.31■□□□□ 0.68
SF3A1-202ENST00000411423 STAT4Q14765 748 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 SLC18A3Q16572 532 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 RAB44Q7Z6P3 723 aaPredicted RBP19.31■□□□□ 0.68
SF3A1-202ENST00000411423 IQCHQ86VS3 1027 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 ZSWIM9Q86XI8 627 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 SLC22A18ASQ8N1D0 253 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 TSEN2Q8NCE0 465 aaKnown RBP19.31■□□□□ 0.68
SF3A1-202ENST00000411423 OR13H1Q8NG92 308 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 OR8K1Q8NGG5 319 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 ZNF564Q8TBZ8 553 aaPredicted RBP19.31■□□□□ 0.68
SF3A1-202ENST00000411423 TSC1Q92574 1164 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 CSPG4P5Q96PW8 444 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 ABHD10Q9NUJ1 306 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 IP6K2Q9UHH9 426 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 PCDHB9Q9Y5E1 797 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 CABIN1Q9Y6J0 2220 aa19.31■□□□□ 0.68
SF3A1-202ENST00000411423 POM121BA6NF01 834 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 IGLON5A6NGN9 336 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 ARHGAP42A6NI28 874 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 MFAP3LO75121 409 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 PEX11BO96011 259 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 PAK4O96013 591 aaPredicted RBP19.3■□□□□ 0.68
SF3A1-202ENST00000411423 TPM3P06753 285 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 EPHA8P29322 1005 aaPredicted RBP19.3■□□□□ 0.68
SF3A1-202ENST00000411423 RXRGP48443 463 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 TAS2R40P59535 323 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 CCDC15Q0P6D6 951 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 MMRN1Q13201 1228 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 TBX2Q13207 712 aaPredicted RBP19.3■□□□□ 0.68
SF3A1-202ENST00000411423 BOLA3Q53S33 107 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 SLC45A4Q5BKX6 768 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 KIAA1161Q6NSJ0 714 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 TEKT4Q8WW24 435 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 KLF6Q99612 283 aaPredicted RBP19.3■□□□□ 0.68
SF3A1-202ENST00000411423 OSBPL1AQ9BXW6 950 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 SLC17A9Q9BYT1 436 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 ERVMER34-1Q9H9K5 563 aa19.3■□□□□ 0.68
SF3A1-202ENST00000411423 TTC24A2A3L6 582 aaPredicted RBP19.29■□□□□ 0.68
SF3A1-202ENST00000411423 C1QTNF9BB2RNN3 333 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 H3BRJ5 948 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 C1QTNF9P0C862 333 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 THEGLP0DJG4 465 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 GRK6P43250 576 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 RPS21P63220 83 aaKnown RBP19.29■□□□□ 0.68
SF3A1-202ENST00000411423 TRIM14Q14142 442 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 TPRG1LQ5T0D9 272 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 ABI3BPQ7Z7G0 1075 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 FAM71BQ8TC56 605 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 SKA1Q96BD8 255 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 KLHDC7BQ96G42 594 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 NCAPGQ9BPX3 1015 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 C1QTNF2Q9BXJ5 285 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 CPEB1Q9BZB8 566 aaKnown RBP19.29■□□□□ 0.68
SF3A1-202ENST00000411423 GPR27Q9NS67 375 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 SPTLC3Q9NUV7 552 aa19.29■□□□□ 0.68
SF3A1-202ENST00000411423 IPO11Q9UI26 975 aaKnown RBP19.29■□□□□ 0.68
SF3A1-202ENST00000411423 TRPM6Q9BX84 2022 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms