RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 COX10Q12887 443 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 USF2Q15853 346 aaPredicted RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 ATP13A4Q4VNC1 1196 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 KIAA1211LQ6NV74 962 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 LAYNQ6UX15 382 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 ARL14Q8N4G2 192 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 SNIP1Q8TAD8 396 aaKnown RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 SLC22A17Q8WUG5 538 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 EDAQ92838 391 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 KCNB2Q92953 911 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 TADA1Q96BN2 335 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 NMD3Q96D46 503 aaKnown RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 MTMR8Q96EF0 704 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 PDZD7Q9H5P4 517 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 ADAMTS1Q9UHI8 967 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 RCOR1Q9UKL0 485 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 AP4E1Q9UPM8 1137 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 MIF4GDA9UHW6 222 aaKnown RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 C5orf58C9J3I9 102 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 LDOC1O95751 146 aaPredicted RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 ITGB6P18564 788 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 SEMG2Q02383 582 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 IYDQ6PHW0 289 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 BBS7Q8IWZ6 715 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 FAM46DQ8NEK8 389 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 MYCBPAPQ8TBZ2 947 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 SGSM3Q96HU1 749 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 FUBP3Q96I24 572 aaKnown RBP eCLIP7.37□□□□□ -1.236e-6■■■■□ 23.4
SCN9A-202ENST00000409435 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 POLR1EQ9GZS1 481 aaKnown RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 NEUROD4Q9HD90 331 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 IMP3Q9NV31 184 aaKnown RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 RBM22Q9NW64 420 aaKnown RBP eCLIP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 MON2Q7Z3U7 1717 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 RGPD8O14715 1765 aaPredicted RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 VSTM5A8MXK1 200 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 SMIM22K7EJ46 135 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 EML1O00423 815 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 ACSL4O60488 711 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 PEX14O75381 377 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 PECAM1P16284 738 aaPredicted RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 CASP1P29466 404 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 HOXC12P31275 282 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 OC90Q02509 493 aaPredicted RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 RGS1Q08116 209 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 UGP2Q16851 508 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 LRRC36Q1X8D7 754 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 EEF1DP3Q658K8 133 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 TTI2Q6NXR4 508 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 RFX8Q6ZV50 586 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 KBTBD6Q86V97 674 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 GAS2L3Q86XJ1 694 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 MMAAQ8IVH4 418 aaKnown RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 PANX3Q96QZ0 392 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 FAM192AQ9GZU8 254 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 PRKAG3Q9UGI9 489 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 DCTN4Q9UJW0 460 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 PPP1R37O75864 691 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 STBD1O95210 358 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 MED26O95402 600 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 TRUB2O95900 331 aaKnown RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 ZNF806P0C7X5 589 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 PABPC1P11940 636 aaKnown RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 TLX1P31314 330 aaPredicted RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 RPA3P35244 121 aaPredicted RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 ANXA11P50995 505 aaKnown RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 RPP38P78345 283 aaKnown RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 RBPJQ06330 500 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 SLC20A2Q08357 652 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 FOXD4Q12950 439 aaPredicted RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 C2CD6Q53TS8 623 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 C16orf89Q6UX73 402 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 SETD3Q86TU7 594 aaPredicted RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 P3H2Q8IVL5 708 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 FAM126BQ8IXS8 530 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 C10orf53Q8N6V4 93 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 TXNDC5Q8NBS9 432 aaKnown RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 ENKURQ8TC29 256 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 BSNDQ8WZ55 320 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 TOP1MTQ969P6 601 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 ELMO2Q96JJ3 720 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 TRAPPC9Q96Q05 1148 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 TRIM51Q9BSJ1 452 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 CHID1Q9BWS9 393 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 PAIP1Q9H074 479 aaKnown RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 GOLPH3LQ9H4A5 285 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 C8orf4Q9NR00 106 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 ERVK-11Q9UQG0 969 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 PNMA8CA0A1B0GUJ8 204 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 LINC01553A4QN01 128 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 A8MU76 341 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 RNF103O00237 685 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 NUDT14O95848 222 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 CLPTM1O96005 669 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 C1RP00736 705 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 ZNF7P17097 686 aaPredicted RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 MMP13P45452 471 aa7.37□□□□□ -1.23
SCN9A-202ENST00000409435 RPS15P62841 145 aaKnown RBP7.37□□□□□ -1.23
SCN9A-202ENST00000409435 ARHGAP8P85298 464 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms