RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 TBC1D23Q9NUY8 699 aa5.61□□□□□ -1.51
CLK1-202ENST00000409403 ARHGEF38Q9NXL2 777 aa5.61□□□□□ -1.51
CLK1-202ENST00000409403 HESX1Q9UBX0 185 aa5.61□□□□□ -1.51
CLK1-202ENST00000409403 TRPS1Q9UHF7 1281 aa5.61□□□□□ -1.51
CLK1-202ENST00000409403 CARD8Q9Y2G2 431 aa5.61□□□□□ -1.51
CLK1-202ENST00000409403 RABGAP1Q9Y3P9 1069 aa5.61□□□□□ -1.51
CLK1-202ENST00000409403 FAM32AQ9Y421 112 aaKnown RBP5.61□□□□□ -1.51
CLK1-202ENST00000409403 ZNF711Q9Y462 761 aa5.61□□□□□ -1.51
CLK1-202ENST00000409403 TTLL3Q9Y4R7 772 aa5.61□□□□□ -1.51
CLK1-202ENST00000409403 CCL15-CCL14A0A0B4J2E2 113 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 FAM47DPA6NHR8 397 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 SMIM23A6NLE4 172 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 CDH16O75309 829 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 KRT36O76013 467 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 CIAO1O76071 339 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 JUNP05412 331 aaKnown RBP5.6□□□□□ -1.51
CLK1-202ENST00000409403 CALM1P0DP23 149 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 CALM2P0DP24 149 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 CALM3P0DP25 149 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 CDK4P11802 303 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 UQCRBP14927 111 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 BRAFP15056 766 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 GYPEP15421 78 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 MUTP22033 750 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 CASP1P29466 404 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 STIP1P31948 543 aaKnown RBP5.6□□□□□ -1.51
CLK1-202ENST00000409403 MAN1A1P33908 653 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 PPARGP37231 505 aaPredicted RBP5.6□□□□□ -1.51
CLK1-202ENST00000409403 MAP2K6P52564 334 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 PLTPP55058 493 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 NUP107P57740 925 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 ZNF280AP59817 542 aaPredicted RBP5.6□□□□□ -1.51
CLK1-202ENST00000409403 COG7P83436 770 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 POU5F1Q01860 360 aaKnown RBP5.6□□□□□ -1.51
CLK1-202ENST00000409403 CALCOCO2Q13137 446 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 ITGA7Q13683 1181 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 GCKRQ14397 625 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 WTAPQ15007 396 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 TBCCQ15814 346 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 CCL15Q16663 113 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 ZNF568Q3ZCX4 644 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 KHDC1Q4VXA5 237 aaKnown RBP5.6□□□□□ -1.51
CLK1-202ENST00000409403 CCDC157Q569K6 752 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 ZNF648Q5T619 568 aaPredicted RBP5.6□□□□□ -1.51
CLK1-202ENST00000409403 FAM91A1Q658Y4 838 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 RWDD4Q6NW29 188 aaKnown RBP5.6□□□□□ -1.51
CLK1-202ENST00000409403 LRRC8BQ6P9F7 803 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 ZNF449Q6P9G9 518 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 VSTM1Q6UX27 236 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 Q6ZNX1 250 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 CCDC149Q6ZUS6 474 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 OTUD6AQ7L8S5 288 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 SLFN11Q7Z7L1 901 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 ZNF761Q86XN6 746 aaPredicted RBP5.6□□□□□ -1.51
CLK1-202ENST00000409403 ALLCQ8N6M5 410 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 METTL13Q8N6R0 699 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 ARL10Q8N8L6 244 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 ANKRD42Q8N9B4 389 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 OR6Y1Q8NGX8 325 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 CCDC110Q8TBZ0 833 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 MGARPQ8TDB4 240 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 MBD6Q96DN6 1003 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 B3GNT5Q9BYG0 378 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 UNKQ9C0B0 810 aaKnown RBP5.6□□□□□ -1.51
CLK1-202ENST00000409403 CCSER1Q9C0I3 900 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 LRRC27Q9C0I9 530 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 SLC6A15Q9H2J7 730 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 RNF41Q9H4P4 317 aaPredicted RBP5.6□□□□□ -1.51
CLK1-202ENST00000409403 RIC8AQ9NPQ8 531 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 CHST12Q9NRB3 414 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 CPA4Q9UI42 421 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 PADI4Q9UM07 663 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 PHTF1Q9UMS5 762 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 KCNJ14Q9UNX9 436 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 NIP7Q9Y221 180 aaKnown RBP eCLIP5.6□□□□□ -1.51
CLK1-202ENST00000409403 TRAF3IP3Q9Y228 551 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 POLHQ9Y253 713 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 CHKBQ9Y259 395 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 FRMD4BQ9Y2L6 1034 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 TSC22D4Q9Y3Q8 395 aa5.6□□□□□ -1.51
CLK1-202ENST00000409403 RIF1Q5UIP0 2472 aaKnown RBP5.6□□□□□ -1.51
CLK1-202ENST00000409403 A0A1W2PRG0 241 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 CCDC160A6NGH7 325 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 MIF4GDA9UHW6 222 aaKnown RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 NPIPB6E9PJ23 425 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 NRP1O14786 923 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 KIAA0391O15091 583 aaKnown RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 PRPF4O43172 522 aaKnown RBP eCLIP5.59□□□□□ -1.51
CLK1-202ENST00000409403 GPAA1O43292 621 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 EDF1O60869 148 aaKnown RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 ZBED4O75132 1171 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 TBX10O75333 385 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 ITGA10O75578 1167 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 SERPINB7O75635 380 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 BAIAP3O94812 1187 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 CLPTM1O96005 669 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 VSIG10L2P0DP72 767 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 ANPEPP15144 967 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 TAC1P20366 129 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 CALML3P27482 149 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms