RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 ARHGAP9Q9BRR9 750 aa12.1□□□□□ -0.47
SPTLC1P3-201ENST00000403408 C2orf49Q9BVC5 232 aaPredicted RBP12.1□□□□□ -0.47
SPTLC1P3-201ENST00000403408 GEMIN8Q9NWZ8 242 aaKnown RBP12.1□□□□□ -0.47
SPTLC1P3-201ENST00000403408 ARHGEF38Q9NXL2 777 aa12.1□□□□□ -0.47
SPTLC1P3-201ENST00000403408 GULP1Q9UBP9 304 aa12.1□□□□□ -0.47
SPTLC1P3-201ENST00000403408 SLC12A6Q9UHW9 1150 aa12.1□□□□□ -0.47
SPTLC1P3-201ENST00000403408 CFAP45Q9UL16 551 aa12.1□□□□□ -0.47
SPTLC1P3-201ENST00000403408 LOXL2Q9Y4K0 774 aa12.1□□□□□ -0.47
SPTLC1P3-201ENST00000403408 C16orf96A6NNT2 1141 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 BECN2A8MW95 431 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 NVLO15381 856 aaKnown RBP12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 ZNF202O95125 648 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 LETM1O95202 739 aaPredicted RBP12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 RPLP0P05388 317 aaKnown RBP12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 ANXA6P08133 673 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 SLC2A3P11169 496 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 CCKBRP32239 447 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 SERPINH1P50454 418 aaKnown RBP12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 KRT83P78385 493 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 FOXK1P85037 733 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 APBA1Q02410 837 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 GCNT1Q02742 428 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 COBLL1Q53SF7 1204 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 GJB7Q6PEY0 223 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 VPS36Q86VN1 386 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 TP53I13Q8NBR0 393 aaPredicted RBP12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 EHBP1Q8NDI1 1231 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 DENND6BQ8NEG7 585 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 PCDH19Q8TAB3 1148 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 ASB12Q8WXK4 309 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 USP7Q93009 1102 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 CCDC47Q96A33 483 aaKnown RBP12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 TBATAQ96M53 351 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 PSMG3-AS1Q96PY0 264 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 MED15Q96RN5 788 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 HEPHQ9BQS7 1158 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 SLC12A9Q9BXP2 914 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 CPEB1Q9BZB8 566 aaKnown RBP12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 SLC25A18Q9H1K4 315 aa12.09□□□□□ -0.47
SPTLC1P3-201ENST00000403408 IGLV3-10A0A075B6K4 115 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 AREL1O15033 823 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 ERBB2P04626 1255 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 RPIAP49247 311 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 CXCR3P49682 368 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 CCDC15Q0P6D6 951 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 MEA1Q16626 185 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 ALG11Q2TAA5 492 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 CARD16Q5EG05 197 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 MANEAQ5SRI9 462 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 SETD3Q86TU7 594 aaPredicted RBP12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 PASD1Q8IV76 773 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 ARL10Q8N8L6 244 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 WDR48Q8TAF3 677 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 BTN2A2Q8WVV5 523 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 JPH3Q8WXH2 748 aaPredicted RBP12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 TSACCQ96A04 125 aaPredicted RBP12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 CCDC114Q96M63 670 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 GFM1Q96RP9 751 aaKnown RBP12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 PPP1R9BQ96SB3 815 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 TRIM62Q9BVG3 475 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 TM6SF2Q9BZW4 377 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 TKTL2Q9H0I9 626 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 LRRN3Q9H3W5 708 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 NDFIP2Q9NV92 336 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 ASNSD1Q9NWL6 643 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 MAN2B2Q9Y2E5 1009 aa12.08□□□□□ -0.48
SPTLC1P3-201ENST00000403408 M0QYT0 321 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 RIOK3O14730 519 aaKnown RBP12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 THAP12O43422 761 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 TSPAN6O43657 245 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 MMP20O60882 483 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 PPFIA2O75334 1257 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 NTRK1P04629 796 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 GLI1P08151 1106 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 KRT5P13647 590 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 ACVRL1P37023 503 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 EIF4A3P38919 411 aaKnown RBP12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 DNA2P51530 1060 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 SGCGQ13326 291 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 EIF3IQ13347 325 aaKnown RBP12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 MORC3Q14149 939 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 C16orf72Q14CZ0 275 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 RAB6CQ53S08 254 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 FAXCQ5TGI0 409 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 ZNF658Q5TYW1 1059 aaPredicted RBP12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 TRNP1Q6NT89 227 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 MACC1Q6ZN28 852 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 SLITRK4Q8IW52 837 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 PCDH20Q8N6Y1 951 aaKnown RBP12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 Q8N9G6 341 aaPredicted RBP12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 NETO2Q8NC67 525 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 GPR156Q8NFN8 814 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 ZNF564Q8TBZ8 553 aaPredicted RBP12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 GLMNQ92990 594 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 PPP1R16AQ96I34 528 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 SPATA32Q96LK8 384 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 NPY6RQ99463 290 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 SPON2Q9BUD6 331 aa12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 GTPBP4Q9BZE4 634 aaKnown RBP12.07□□□□□ -0.48
SPTLC1P3-201ENST00000403408 CEP44Q9C0F1 390 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms