RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 IPMKQ8NFU5 416 aa14.4□□□□□ -0.1
SKA1-202ENST00000398452 FBXO25Q8TCJ0 367 aa14.4□□□□□ -0.1
SKA1-202ENST00000398452 PBXIP1Q96AQ6 731 aa14.4□□□□□ -0.1
SKA1-202ENST00000398452 ISG20Q96AZ6 181 aaKnown RBP14.4□□□□□ -0.1
SKA1-202ENST00000398452 NUDCD1Q96RS6 583 aa14.4□□□□□ -0.1
SKA1-202ENST00000398452 MGME1Q9BQP7 344 aa14.4□□□□□ -0.1
SKA1-202ENST00000398452 GRHL1Q9NZI5 618 aa14.4□□□□□ -0.1
SKA1-202ENST00000398452 PIAS3Q9Y6X2 628 aa14.4□□□□□ -0.1
SKA1-202ENST00000398452 ZDBF2Q9HCK1 2354 aa14.4□□□□□ -0.1
SKA1-202ENST00000398452 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.39□□□□□ -0.11
SKA1-202ENST00000398452 OTOL1A6NHN0 477 aaPredicted RBP14.39□□□□□ -0.11
SKA1-202ENST00000398452 SPECC1L-ADORA2AF8WAN1 911 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 GOLGA8MH3BSY2 632 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 ARHGAP33O14559 1287 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 DYNC1I1O14576 645 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 TRIM24O15164 1050 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 PMPCBO75439 489 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 SRFP11831 508 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 GLULP15104 373 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 IVDP26440 423 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 OPRD1P41143 372 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 CTSOP43234 321 aaPredicted RBP14.39□□□□□ -0.11
SKA1-202ENST00000398452 DSC2Q02487 901 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 GRSF1Q12849 480 aaKnown RBP eCLIP14.39□□□□□ -0.11
SKA1-202ENST00000398452 GRM3Q14832 879 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 DLG2Q15700 870 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 PCSK7Q16549 785 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 HIF1AQ16665 826 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 SDE2Q6IQ49 451 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 C22orf39Q6P5X5 142 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 ALYREFQ86V81 257 aaKnown RBP14.39□□□□□ -0.11
SKA1-202ENST00000398452 ZCCHC9Q8N567 271 aaKnown RBP14.39□□□□□ -0.11
SKA1-202ENST00000398452 KDM1BQ8NB78 822 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 MCUQ8NE86 351 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 CYB5D2Q8WUJ1 264 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 PRCCQ92733 491 aaPredicted RBP14.39□□□□□ -0.11
SKA1-202ENST00000398452 IMP4Q96G21 291 aaKnown RBP14.39□□□□□ -0.11
SKA1-202ENST00000398452 EXOC2Q96KP1 924 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 RBM15Q96T37 977 aaKnown RBP eCLIP14.39□□□□□ -0.11
SKA1-202ENST00000398452 TM6SF2Q9BZW4 377 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 ARFGAP3Q9NP61 516 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 UBP1Q9NZI7 540 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 SHROOM3Q8TF72 1996 aa14.39□□□□□ -0.11
SKA1-202ENST00000398452 BHMG1C9JSJ3 638 aaPredicted RBP14.38□□□□□ -0.11
SKA1-202ENST00000398452 ARNTLO00327 626 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 NPC1O15118 1278 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 EIF3HO15372 352 aaKnown RBP eCLIP14.38□□□□□ -0.11
SKA1-202ENST00000398452 PPFIA2O75334 1257 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 GSRP00390 522 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 MT-CO1P00395 513 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 DRD1P21728 446 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 CTHP32929 405 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 MAGEA6P43360 314 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 TNFRSF4P43489 277 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 SOX9P48436 509 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 STK19P49842 368 aaPredicted RBP14.38□□□□□ -0.11
SKA1-202ENST00000398452 BCL2L1Q07817 233 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 CDH17Q12864 832 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 TRADDQ15628 312 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 SLC14A2Q15849 920 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 CARD16Q5EG05 197 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 SYCP2LQ5T4T6 812 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 ZDHHC24Q6UX98 284 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 SERPINA13PQ6UXR4 307 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 SRLQ86TD4 932 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 GSPT2Q8IYD1 628 aaKnown RBP14.38□□□□□ -0.11
SKA1-202ENST00000398452 NDUFAF2Q8N183 169 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 OR2AP1Q8NGE2 309 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 SPATA22Q8NHS9 363 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 TBL1YQ9BQ87 522 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 HEBP1Q9NRV9 189 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 BFARQ9NZS9 450 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 SUN2Q9UH99 717 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 ARIH1Q9Y4X5 557 aaPredicted RBP14.38□□□□□ -0.11
SKA1-202ENST00000398452 ACTL7AQ9Y615 435 aa14.38□□□□□ -0.11
SKA1-202ENST00000398452 NYNRINQ9P2P1 1898 aaKnown RBP14.38□□□□□ -0.11
SKA1-202ENST00000398452 TRIOO75962 3097 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 K7ERQ8 282 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 MAN2B1O00754 1011 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 ATP9BO43861 1147 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 MT-CYBP00156 380 aaPredicted RBP14.37□□□□□ -0.11
SKA1-202ENST00000398452 MLNP12872 115 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 NFKBIAP25963 317 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 SERPINA4P29622 427 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 CSNK1DP48730 415 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 GALK1P51570 392 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 EPHB1P54762 984 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 GAB4Q2WGN9 574 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 BBS9Q3SYG4 887 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 ANKRD22Q5VYY1 191 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 ALG1LQ6GMV1 187 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 TRMT11Q7Z4G4 463 aaKnown RBP14.37□□□□□ -0.11
SKA1-202ENST00000398452 PGBD5Q8N414 524 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 PDCD6IPQ8WUM4 868 aaKnown RBP14.37□□□□□ -0.11
SKA1-202ENST00000398452 FICDQ9BVA6 458 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 ADGRE3Q9BY15 652 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 PHACTR1Q9C0D0 580 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 TNKS2Q9H2K2 1166 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 ATP13A3Q9H7F0 1226 aa14.37□□□□□ -0.11
SKA1-202ENST00000398452 SLC2A4RGQ9NR83 387 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms