RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 DGKDQ16760 1214 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 LRRC23Q53EV4 343 aaPredicted RBP12.85□□□□□ -0.35
SHMT1-205ENST00000395684 PCID2Q5JVF3 399 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 TRIM67Q6ZTA4 783 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 HEXDCQ8WVB3 486 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 ASB9Q96DX5 294 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 PGAP3Q96FM1 320 aaPredicted RBP12.85□□□□□ -0.35
SHMT1-205ENST00000395684 MRPL1Q9BYD6 325 aaKnown RBP12.85□□□□□ -0.35
SHMT1-205ENST00000395684 WDCPQ9H6R7 721 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 FIS1Q9Y3D6 152 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 STRNO43815 780 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 CACNG3O60359 315 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 NPHS1O60500 1241 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 PCSK6P29122 969 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 ARL13BQ3SXY8 428 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 FAM219BQ5XKK7 198 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 DENND5AQ6IQ26 1287 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 RPS27LQ71UM5 84 aaKnown RBP12.85□□□□□ -0.35
SHMT1-205ENST00000395684 AMIGO2Q86SJ2 522 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 LINC00523Q86TU6 105 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 SHCBP1Q8NEM2 672 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 FAM81AQ8TBF8 368 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 SPPL2BQ8TCT7 592 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 EME1Q96AY2 570 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 MRPL46Q9H2W6 279 aaKnown RBP12.85□□□□□ -0.35
SHMT1-205ENST00000395684 COQ10BQ9H8M1 238 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 NCKIPSDQ9NZQ3 722 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 CNOT11Q9UKZ1 510 aaKnown RBP12.85□□□□□ -0.35
SHMT1-205ENST00000395684 PHF24Q9UPV7 400 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 RNF11Q9Y3C5 154 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 SHROOM3Q8TF72 1996 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 MYBPHLA2RUH7 354 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 H3BSA7 217 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 PDLIM1O00151 329 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 FBP2O00757 339 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 AURKAO14965 403 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 XPOTO43592 962 aaKnown RBP12.84□□□□□ -0.35
SHMT1-205ENST00000395684 CSPG5O95196 566 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 PENKP01210 267 aaPredicted RBP12.84□□□□□ -0.35
SHMT1-205ENST00000395684 SLC1A2P43004 574 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 HSPA13P48723 471 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 SULT2A1Q06520 285 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 LRP8Q14114 963 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 UGP2Q16851 508 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 CHSY3Q70JA7 882 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 BHLHA9Q7RTU4 235 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 KLHDC8BQ8IXV7 354 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 IPMKQ8NFU5 416 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 LRTOMTQ8WZ04 291 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 LENG1Q96BZ8 264 aaPredicted RBP12.84□□□□□ -0.35
SHMT1-205ENST00000395684 DCPSQ96C86 337 aaKnown RBP12.84□□□□□ -0.35
SHMT1-205ENST00000395684 POMKQ9H5K3 350 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 UTP6Q9NYH9 597 aaKnown RBP12.84□□□□□ -0.35
SHMT1-205ENST00000395684 GTSE1Q9NYZ3 720 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 AP4S1Q9Y587 144 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 TRPC5OSA6NMA1 111 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 CAPN15O75808 1086 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 HOXD8P13378 290 aaPredicted RBP12.84□□□□□ -0.35
SHMT1-205ENST00000395684 KCNA5P22460 613 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 DNAJB1P25685 340 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 PSMD8P48556 350 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 CLCN2P51788 898 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 C1QTNF8P60827 252 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 PPIL2Q13356 520 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 PPP1R3AQ16821 1122 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 CHERPQ8IWX8 916 aaKnown RBP12.84□□□□□ -0.35
SHMT1-205ENST00000395684 SNX31Q8N9S9 440 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 SLCO4A1Q96BD0 722 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 PCED1BQ96HM7 432 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 ELMO2Q96JJ3 720 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 TBL1YQ9BQ87 522 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 TRPC7Q9HCX4 862 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 CNGB3Q9NQW8 809 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 DMTF1Q9Y222 760 aa12.84□□□□□ -0.35
SHMT1-205ENST00000395684 PRORSD1PA6NEY8 169 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 UNCXA6NJT0 531 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 AP3B1O00203 1094 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 PTGESO14684 152 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 CXCR3P49682 368 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 RALGDSQ12967 914 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 PDAP1Q13442 181 aaKnown RBP12.83□□□□□ -0.36
SHMT1-205ENST00000395684 DUSP28Q4G0W2 176 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 RAB41Q5JT25 222 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 PM20D1Q6GTS8 502 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 FASTKD5Q7L8L6 764 aaKnown RBP12.83□□□□□ -0.36
SHMT1-205ENST00000395684 PIWIL4Q7Z3Z4 852 aaKnown RBP12.83□□□□□ -0.36
SHMT1-205ENST00000395684 SMG8Q8ND04 991 aaKnown RBP12.83□□□□□ -0.36
SHMT1-205ENST00000395684 OR6J1Q8NGC5 347 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 DNAJB3Q8WWF6 145 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 ZFP42Q96MM3 310 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 MRPL57Q9BQC6 102 aaKnown RBP12.83□□□□□ -0.36
SHMT1-205ENST00000395684 CHST12Q9NRB3 414 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 CACNA2D2Q9NY47 1150 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 EPS15L1Q9UBC2 864 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 SUCOQ9UBS9 1254 aaKnown RBP12.83□□□□□ -0.36
SHMT1-205ENST00000395684 TMCO1Q9UM00 188 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 IPPQ9Y573 584 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 TIMM13Q9Y5L4 95 aaPredicted RBP12.83□□□□□ -0.36
SHMT1-205ENST00000395684 TLL2Q9Y6L7 1015 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 SCN4AP35499 1836 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms