RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 CORO1AP31146 461 aaKnown RBP11.25□□□□□ -0.61
TCOF1-203ENST00000394269 SLC11A2P49281 568 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 TUFMP49411 452 aaKnown RBP11.25□□□□□ -0.61
TCOF1-203ENST00000394269 RASSF2P50749 326 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 RBM20Q5T481 1227 aaKnown RBP11.25□□□□□ -0.61
TCOF1-203ENST00000394269 MBLAC2Q68D91 279 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 SLC39A5Q6ZMH5 540 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 EP400NLQ6ZTU2 488 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 UMODL1-AS1Q8N2C9 162 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 PGBD5Q8N414 524 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 PIWIL2Q8TC59 973 aaKnown RBP11.25□□□□□ -0.61
TCOF1-203ENST00000394269 ACMSDQ8TDX5 336 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 IGSF21Q96ID5 467 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 CLSTN3Q9BQT9 956 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 ARHGEF3Q9NR81 526 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 ACOT9Q9Y305 439 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 NEMP2A6NFY4 417 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 B2RBV5 119 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 GSRP00390 522 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 COL6A1P12109 1028 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 STMN1P16949 149 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 PSEN1P49768 467 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 SESN3P58005 492 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 DEFB103AP81534 67 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 PTPRRQ15256 657 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 NXNQ6DKJ4 435 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 MSANTD2Q6P1R3 559 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 NAPRTQ6XQN6 538 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 ATG14Q6ZNE5 492 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 RPS27LQ71UM5 84 aaKnown RBP11.25□□□□□ -0.61
TCOF1-203ENST00000394269 WBP2Q969T9 261 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 NSL1Q96IY1 281 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 TBATAQ96M53 351 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 WWP1Q9H0M0 922 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 ATP13A1Q9HD20 1204 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 TMEM248Q9NWD8 314 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 APOBEC2Q9Y235 224 aaKnown RBP11.25□□□□□ -0.61
TCOF1-203ENST00000394269 GON4LQ3T8J9 2241 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.25□□□□□ -0.61
TCOF1-203ENST00000394269 E9PBE3 544 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 KLHL41O60662 606 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 SERPINE1P05121 402 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 CHRNGP07510 517 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 MBL2P11226 248 aaPredicted RBP11.25□□□□□ -0.61
TCOF1-203ENST00000394269 CSF2RAP15509 400 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 GJA1P17302 382 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 ARRB2P32121 409 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 SGSHP51688 502 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 ARSDP51689 593 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 TAS2R39P59534 338 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 POTEHQ6S545 545 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 CARNMT1Q8N4J0 409 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 EFHBQ8N7U6 833 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 DPF3Q92784 378 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 APBB2Q92870 758 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 SLC7A6OSQ96CW6 309 aaPredicted RBP11.25□□□□□ -0.61
TCOF1-203ENST00000394269 VN1R3Q9BXE9 311 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 ACE2Q9BYF1 805 aaPredicted RBP11.25□□□□□ -0.61
TCOF1-203ENST00000394269 TSR3Q9UJK0 312 aaKnown RBP11.25□□□□□ -0.61
TCOF1-203ENST00000394269 PCDHGC4Q9Y5F7 938 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 ZNF840PA6NDX5 716 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 PRR5-ARHGAP8B1AHC4 643 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 ACSL4O60488 711 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 KLKB1P03952 638 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 ARNTP27540 789 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 HOXC13P31276 330 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 NDST2P52849 883 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 ARHGAP8P85298 464 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 TWF1Q12792 350 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 HSF5Q4G112 596 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 SIRPB2Q5JXA9 342 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 TXNDC8Q6A555 127 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 ZNF781Q8N8C0 355 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 OR6K2Q8NGY2 324 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 AGAP11Q8TF27 550 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 UTP4Q969X6 686 aaKnown RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 PHF21BQ96EK2 531 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 C7orf26Q96N11 449 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 RAB3IPQ96QF0 476 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 UBE2OQ9C0C9 1292 aaKnown RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 RHOJQ9H4E5 214 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 MTF2Q9Y483 593 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 CASP8AP2Q9UKL3 1982 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 MEI4A8MW99 385 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 BIRC5O15392 142 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 ENTPD5O75356 428 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 RPSAP08865 295 aaKnown RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 PRSS56P0CW18 603 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 SP100P23497 879 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 ABCE1P61221 599 aaKnown RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 ZNF177Q13360 481 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 SERINC3Q13530 473 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 PEX6Q13608 980 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 SNX30Q5VWJ9 437 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 TREML1Q86YW5 311 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 FSTL5Q8N475 847 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 NAT14Q8WUY8 206 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 SREK1Q8WXA9 508 aaKnown RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 IMP4Q96G21 291 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms