RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 SLC9A6Q92581 669 aa8.21□□□□□ -1.09
LIMS1-203ENST00000393310 MCUR1Q96AQ8 359 aa8.21□□□□□ -1.09
LIMS1-203ENST00000393310 GDAP1L1Q96MZ0 367 aa8.21□□□□□ -1.09
LIMS1-203ENST00000393310 MBOAT7Q96N66 472 aa8.21□□□□□ -1.09
LIMS1-203ENST00000393310 FZD8Q9H461 694 aa8.21□□□□□ -1.09
LIMS1-203ENST00000393310 EHD1Q9H4M9 534 aa8.21□□□□□ -1.09
LIMS1-203ENST00000393310 PDZD7Q9H5P4 517 aa8.21□□□□□ -1.09
LIMS1-203ENST00000393310 ZSWIM6Q9HCJ5 1215 aa8.21□□□□□ -1.09
LIMS1-203ENST00000393310 CNOT8Q9UFF9 292 aaKnown RBP8.21□□□□□ -1.09
LIMS1-203ENST00000393310 KLHL3Q9UH77 587 aa8.21□□□□□ -1.09
LIMS1-203ENST00000393310 KCND3Q9UK17 655 aa8.21□□□□□ -1.09
LIMS1-203ENST00000393310 APPL1Q9UKG1 709 aa8.21□□□□□ -1.09
LIMS1-203ENST00000393310 ZNF646O15015 1829 aaPredicted RBP8.21□□□□□ -1.09
LIMS1-203ENST00000393310 POTEMA6NI47 508 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 RIPK2O43353 540 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 CUTAO60888 179 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 SNX4O95219 450 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 ENO2P09104 434 aaPredicted RBP8.21□□□□□ -1.1
LIMS1-203ENST00000393310 FTH1P19P0C7X4 201 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 IDO1P14902 403 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 ART3Q13508 389 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 EFR3AQ14156 821 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 CASC4Q6P4E1 433 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 GUF1Q8N442 669 aaKnown RBP8.21□□□□□ -1.1
LIMS1-203ENST00000393310 TTC13Q8NBP0 860 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 ZBTB44Q8NCP5 570 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 CAPZA3Q96KX2 299 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 FOPNLQ96NB1 174 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 TSSK1BQ9BXA7 367 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 GSDMCQ9BYG8 508 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 SP110Q9HB58 689 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 SPHK2Q9NRA0 654 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 TUBGCP4Q9UGJ1 667 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 M0QX08 132 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 PDLIM1O00151 329 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 VEGFDO43915 354 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 TCEA3O75764 348 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 CYP1A2P05177 515 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 ARL2P36404 184 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 LTBRP36941 435 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 GRIA4P48058 902 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 ACOT2P49753 483 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 SLC12A2P55011 1212 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 XKR4Q5GH76 650 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 BEND5Q7L4P6 421 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 NELFCDQ8IXH7 590 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 PHF21AQ96BD5 680 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 TOE1Q96GM8 510 aaKnown RBP8.21□□□□□ -1.1
LIMS1-203ENST00000393310 CNDP1Q96KN2 507 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 CCDC90BQ9GZT6 254 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 PCIF1Q9H4Z3 704 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 CATSPERBQ9H7T0 1116 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 NEK6Q9HC98 313 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 VANGL2Q9ULK5 521 aa8.21□□□□□ -1.1
LIMS1-203ENST00000393310 NID2Q14112 1375 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 KRT87PA6NCN2 255 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 ZNF891A8MT65 544 aaPredicted RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 TGDSO95455 350 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 CD58P19256 250 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 TCN2P20062 427 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 PTGS1P23219 599 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 CCND1P24385 295 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 FXR2P51116 673 aaKnown RBP eCLIP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 VAMP7P51809 220 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 STX5Q13190 355 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 KRR1Q13601 381 aaKnown RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 NCOA4Q13772 614 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 SQLEQ14534 574 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 MBTPS1Q14703 1052 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 IER5LQ5T953 404 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 GPR139Q6DWJ6 353 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 GAS2L3Q86XJ1 694 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 ALLCQ8N6M5 410 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 MYLPFQ96A32 169 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 VPS39Q96JC1 886 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 RBM14Q96PK6 669 aaKnown RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 TEFMQ96QE5 360 aaKnown RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 BARD1Q99728 777 aaKnown RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 FAM83CQ9BQN1 747 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 DPH1Q9BZG8 443 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 EIF2B4Q9UI10 523 aaKnown RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 MED19A0JLT2 244 aaPredicted RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 PRAMEF26H0Y7S4 382 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 IFRD1O00458 451 aaPredicted RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 KCNH1O95259 989 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 PAPSS2O95340 614 aaPredicted RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 ZNF883P0CG24 379 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 GJA1P17302 382 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 HOXC13P31276 330 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 NLRP12P59046 1061 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 CRY1Q16526 586 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 HADHQ16836 314 aaKnown RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 CFAP221Q4G0U5 840 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 EGFLAMQ63HQ2 1017 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 RWDD4Q6NW29 188 aaKnown RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 DEFB119Q8N690 84 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 PNPT1Q8TCS8 783 aaKnown RBP8.2□□□□□ -1.1
LIMS1-203ENST00000393310 AGR3Q8TD06 166 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 SLC38A3Q99624 504 aa8.2□□□□□ -1.1
LIMS1-203ENST00000393310 TRIM9Q9C026 710 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms