RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 TMEM163Q8TC26 289 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 STT3BQ8TCJ2 826 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 NRG4Q8WWG1 115 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 SLC5A5Q92911 643 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 GDF15Q99988 308 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 LMF2Q9BU23 707 aaKnown RBP-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 KLHL1Q9NR64 748 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 XPR1Q9UBH6 696 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 EXO1Q9UQ84 846 aaKnown RBP-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 WDR87Q6ZQQ6 2873 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 ZNF292O60281 2723 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 TPRP12270 2363 aaKnown RBP-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 IGHV3OR16-10A0A075B7F0 116 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 hDV102S1A0JD36 115 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 CXorf65A6NEN9 183 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 ACOD1A6NK06 481 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 PDPK1O15530 556 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 RAPGEF3O95398 923 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 GRPP07492 148 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 XRCC6P12956 609 aaKnown RBP eCLIP-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 BCL3P20749 454 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 NFKBIAP25963 317 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 CHATP28329 748 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 PRDX5P30044 214 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 PMELP40967 661 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 ZFP36L2P47974 494 aaKnown RBP-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 ECT2LQ008S8 904 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 KIF23Q02241 960 aaPredicted RBP-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 PAX8Q06710 450 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 PNLIPRP3Q17RR3 467 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 SGSM1Q2NKQ1 1148 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 KHDC1Q4VXA5 237 aaKnown RBP-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 EIPR1Q53HC9 387 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 PWWP2BQ6NUJ5 590 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 RBMS3Q6XE24 437 aaKnown RBP-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 FAM90A1Q86YD7 464 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 DPP10Q8N608 796 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 HORMAD2Q8N7B1 307 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 CMASQ8NFW8 434 aaPredicted RBP-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 OR52N4Q8NGI2 321 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 DNAJB14Q8TBM8 379 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 FCAMRQ8WWV6 532 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 KAT5Q92993 513 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 TOMM40LQ969M1 308 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 ZNF333Q96JL9 665 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 CLUHP3Q96NS8 147 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 TRAPPC9Q96Q05 1148 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 TMX1Q9H3N1 280 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 SAP30LQ9HAJ7 183 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 MYNNQ9NPC7 610 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 ZNF319Q9P2F9 582 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 LRWD1Q9UFC0 647 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 NIPSNAP3AQ9UFN0 247 aaPredicted RBP-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 PLEKHM1Q9Y4G2 1056 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 PKD1L2Q7Z442 2459 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 PRRC2CQ9Y520 2896 aaKnown RBP-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 SPTBN2O15020 2390 aa-0.56□□□□□ -2.5
RNU6-540P-201ENST00000384622 CHD9Q3L8U1 2897 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 KPNA7A9QM74 516 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 CLIC2O15247 247 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 MSI1O43347 362 aaKnown RBP-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 RASA4O43374 803 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 UNC5CO95185 931 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 MAP4K4O95819 1239 aaPredicted RBP-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 IGLV3-19P01714 112 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 RBMS1P29558 406 aaKnown RBP-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 STAT6P42226 847 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 GATMP50440 423 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 EFNA5P52803 228 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 TERF1P54274 439 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 BRWD1-AS2P59051 145 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 EIF4A1P60842 406 aaKnown RBP-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 SRSF2Q01130 221 aaKnown RBP-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 RELQ04864 619 aaPredicted RBP-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 SPOCK1Q08629 439 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 NECTIN1Q15223 517 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 CTU2Q2VPK5 515 aaKnown RBP-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 FAM69BQ5VUD6 431 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 VASH2Q86V25 355 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 IGFN1Q86VF2 1251 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 VPS37DQ86XT2 251 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 NT5DC4Q86YG4 428 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 METTL25Q8N6Q8 603 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 C11orf44Q8N8P7 122 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 POC5Q8NA72 575 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 ZNF540Q8NDQ6 660 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 C1orf147Q96MC9 270 aaPredicted RBP-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 CFAP57Q96MR6 1250 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 CSF3RQ99062 836 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 GLIS2Q9BZE0 524 aaPredicted RBP-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 SLC39A8Q9C0K1 460 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 LAT2Q9GZY6 243 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 PATZ1Q9HBE1 687 aaKnown RBP-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 SGK2Q9HBY8 427 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 ZNF446Q9NWS9 450 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 MAP3K20Q9NYL2 800 aaKnown RBP-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 NUDT4Q9NZJ9 180 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 LIMA1Q9UHB6 759 aaKnown RBP-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 STEAP1Q9UHE8 339 aa-0.57□□□□□ -2.5
RNU6-540P-201ENST00000384622 SAP30BPQ9UHR5 308 aaKnown RBP-0.57□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms