RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 HLFQ16534 295 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 SH2D4BQ5SQS7 431 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 TMEM268Q5VZI3 342 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 PTGR2Q8N8N7 351 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 LILRB1Q8NHL6 650 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 AFG1LQ8WV93 481 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 ZNF333Q96JL9 665 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 FRG2BQ96QU4 278 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 NAP1L4Q99733 375 aaKnown RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 DDX23Q9BUQ8 820 aaKnown RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 CTDSP1Q9GZU7 261 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 MALT1Q9UDY8 824 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 SRPRBQ9Y5M8 271 aaKnown RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 RRN3P2A6NIE6 340 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 E7EVH7 732 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 J3KR12 359 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 NCAM2O15394 837 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 LINC01565O15544 149 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 RNMTO43148 476 aaKnown RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 FAM155BO75949 473 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 CNTFP26441 200 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 ADD2P35612 726 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 CYP4A11Q02928 519 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 CAPSQ13938 189 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 ADCK5Q3MIX3 580 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 RUNDC3AQ59EK9 446 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 ZNF484Q5JVG2 852 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 CCDC70Q6NSX1 233 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 MMS22LQ6ZRQ5 1243 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 C2CD5Q86YS7 1000 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 FAM216AQ8WUB2 273 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 NR4A3Q92570 626 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 GOLGA1Q92805 767 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 MSTO1Q9BUK6 570 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 DDX31Q9H8H2 851 aaKnown RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 CLK4Q9HAZ1 481 aaKnown RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 WDR6Q9NNW5 1121 aaKnown RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 NDUFAF4Q9P032 175 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 FEM1BQ9UK73 627 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 LRRFIP2Q9Y608 721 aaKnown RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 IGHV4-28A0A0C4DH34 117 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 DYTNA2CJ06 578 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 C17orf102A2RUQ5 167 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 EYA2O00167 538 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 HNRNPRO43390 633 aaKnown RBP2.32□□□□□ -2.04
VPS13A-206ENST00000376646 KRT86O43790 486 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 SLC25A17O43808 307 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 POLBP06746 335 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 MYZAPP0CAP1 466 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 ENO3P13929 434 aaPredicted RBP2.32□□□□□ -2.04
VPS13A-206ENST00000376646 RXRAP19793 462 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 DCTDP32321 178 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 MTNR1AP48039 350 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 CDK7P50613 346 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 RPS6KA3P51812 740 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 MVDP53602 400 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 DLX5P56178 289 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 TUBA1BP68363 451 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 MYBPHQ13203 477 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 BYSLQ13895 437 aaKnown RBP2.32□□□□□ -2.04
VPS13A-206ENST00000376646 KRT81Q14533 505 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 FBXO47Q5MNV8 452 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 TYW3Q6IPR3 259 aaKnown RBP2.32□□□□□ -2.04
VPS13A-206ENST00000376646 HERC6Q8IVU3 1022 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 PGBD5Q8N414 524 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 TEX45Q8NA69 505 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 OR6Y1Q8NGX8 325 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 SPPL3Q8TCT6 385 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 PKP4Q99569 1192 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 PYM1Q9BRP8 204 aaKnown RBP2.32□□□□□ -2.04
VPS13A-206ENST00000376646 SLC25A33Q9BSK2 321 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 MVB12BQ9H7P6 319 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 SDF2L1Q9HCN8 221 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 RIC8AQ9NPQ8 531 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 DONSONQ9NYP3 566 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 GGA3Q9NZ52 723 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 KCNG2Q9UJ96 466 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 WDR81Q562E7 1941 aa2.32□□□□□ -2.04
VPS13A-206ENST00000376646 DENND3A2RUS2 1198 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 SERPINI2O75830 405 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 CD53P19397 219 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 SKIV2L2P42285 1042 aaKnown RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 AARSP49588 968 aaKnown RBP eCLIP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 RBM5P52756 815 aaKnown RBP eCLIP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 ARHGAP8P85298 464 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 ME3Q16798 604 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 ZNF672Q499Z4 452 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 NAPEPLDQ6IQ20 393 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 FSIP1Q8NA03 581 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 THAP4Q8WY91 577 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 IGSF21Q96ID5 467 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 COG8Q96MW5 612 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 NODALQ96S42 347 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 UBA5Q9GZZ9 404 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 MAF1Q9H063 256 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 GAREM1Q9H706 876 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 CHODLQ9H9P2 273 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 AGO1Q9UL18 857 aaKnown RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 PNMA2Q9UL42 364 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 DHDHQ9UQ10 334 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms