RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PFDN2Q9UHV9 154 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 HCN4Q9Y3Q4 1203 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 EPRSP07814 1512 aaKnown RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 PPIP5K1Q6PFW1 1433 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TVP23AA6NH52 213 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 LCMT2O60294 686 aaKnown RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 XYLBO75191 536 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 GCATO75600 419 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 SLC34A2O95436 690 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 CCNYL3P0C7X3 344 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ADRA1DP25100 572 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 UGT2B15P54855 530 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 GABREP78334 506 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ATP1A4Q13733 1029 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 PTK6Q13882 451 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 PPP1R26Q5T8A7 1209 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 BAIAP2L2Q6UXY1 529 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TMEM26Q6ZUK4 368 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF367Q7RTV3 350 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ARHGAP12Q8IWW6 846 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 RHOT1Q8IXI2 618 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 KAT2AQ92830 837 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ZHX1-C8orf76Q96EF9 292 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ERP44Q9BS26 406 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 SLC5A7Q9GZV3 580 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ACTR8Q9H981 624 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ELP3Q9H9T3 547 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 FZD3Q9NPG1 666 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 CFAP97Q9P2B7 532 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 MGAT4CQ9UBM8 478 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 EDARQ9UNE0 448 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 DHRS7Q9Y394 339 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 SOBPA7XYQ1 873 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 USP17L12C9JPN9 530 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 USP17L21D6R901 530 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TERTO14746 1132 aaKnown RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TCAPO15273 167 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 SGTAO43765 313 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TMEM253P0C7T8 217 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 AHCYP23526 432 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 FAUP35544 74 aaKnown RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 P2RX1P51575 399 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 USP11P51784 963 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ACLYP53396 1101 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 NAGLUP54802 743 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 OVGP1Q12889 678 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 BRMS1LQ5PSV4 323 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ANO7Q6IWH7 933 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 PAPD4Q6PIY7 484 aaKnown RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 MFSD7Q6UXD7 560 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TSHZ1Q6ZSZ6 1077 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ACOT1Q86TX2 421 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TMEM35BQ8NCS4 154 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 PNMA1Q8ND90 353 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 PSMA8Q8TAA3 256 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 MAFIPQ8WZ33 124 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 MCCC1Q96RQ3 725 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 POLR3FQ9H1D9 316 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 CIB4A0PJX0 185 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 CCDC182A6NF36 153 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF878C9JN71 531 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 J3QRK9 145 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 POLRMTO00411 1230 aaKnown RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 NR5A2O00482 541 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 MDM4O15151 490 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ENSAO43768 121 aaKnown RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ZIC2O95409 532 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 CRTAMO95727 393 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 IFNA7P01567 189 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 CRYBA1P05813 215 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 BUD31P41223 144 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 MMP13P45452 471 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 MAPK12P53778 367 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 PRSS12P56730 875 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TAS2R41P59536 307 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ACTR3P61158 418 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TXNL4AP83876 142 aaKnown RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 NFE2L1Q14494 772 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 DLG2Q15700 870 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 INAVAQ3KP66 663 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 MTHFD1LQ6UB35 978 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF621Q6ZSS3 439 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TMPPEQ6ZT21 453 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TMPRSS7Q7RTY8 843 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ITIH5Q86UX2 942 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 UBR7Q8N806 425 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ATP6V0D2Q8N8Y2 350 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 OR5M3Q8NGP4 307 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 GRIN3AQ8TCU5 1115 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 SGF29Q96ES7 293 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 CCDC74BQ96LY2 380 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 IRX2Q9BZI1 471 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-202ENST00000375405 EQTNQ9NQ60 294 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 ARL15Q9NXU5 204 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 PLEKHA6Q9Y2H5 1048 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 SH3TC1Q8TE82 1336 aa4.68□□□□□ -1.66
SCN1A-202ENST00000375405 TBC1D3DA0A087WVF3 549 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 TBC1D3IA0A087WXS9 549 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 TBC1D3EA0A087X179 549 aa4.67□□□□□ -1.66
SCN1A-202ENST00000375405 TBC1D3KA0A087X1G2 549 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms