RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MYL3P08590 195 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 FAM58BPP0C7Q3 252 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 YWHAQP27348 245 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 PRDX6P30041 224 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 KCTD11Q693B1 232 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 FASTKD5Q7L8L6 764 aaKnown RBP12.27□□□□□ -0.45
CLIP3-201ENST00000360535 FAM35AQ86V20 835 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 ZFP28Q8NHY6 868 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 SCAMP5Q8TAC9 235 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 FAM110BQ8TC76 370 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 MAF1Q9H063 256 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 RBM22Q9NW64 420 aaKnown RBP eCLIP12.27□□□□□ -0.45
CLIP3-201ENST00000360535 DERAQ9Y315 318 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 TCAF2A6NFQ2 919 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 PYGLP06737 847 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 CKMT2P17540 419 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 MAGEA12P43365 314 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 CLCNKBP51801 687 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 CBLBQ13191 982 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 FASTKQ14296 549 aaKnown RBP12.26□□□□□ -0.45
CLIP3-201ENST00000360535 MAP7D1Q3KQU3 841 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 KRT80Q6KB66 452 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 ALKAL1Q6UXT8 129 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 TAC4Q86UU9 113 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 TMEM151AQ8N4L1 468 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 DGCR14Q96DF8 476 aaKnown RBP12.26□□□□□ -0.45
CLIP3-201ENST00000360535 BTBD9Q96Q07 612 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 NOL11Q9H8H0 719 aaKnown RBP12.26□□□□□ -0.45
CLIP3-201ENST00000360535 ARHGEF38Q9NXL2 777 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 NCKIPSDQ9NZQ3 722 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 RIMS3Q9UJD0 308 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 ZNF839A8K0R7 811 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 CASQ2O14958 399 aaPredicted RBP12.26□□□□□ -0.45
CLIP3-201ENST00000360535 TIPRLO75663 272 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 SUPT7LO94864 414 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 CCDC166P0CW27 439 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 PNPLA4P41247 253 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 TSTD2Q5T7W7 516 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 PKN3Q6P5Z2 889 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 KDM1BQ8NB78 822 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 PPHLN1Q8NEY8 458 aaKnown RBP12.26□□□□□ -0.45
CLIP3-201ENST00000360535 ZMIZ2Q8NF64 920 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 STYXQ8WUJ0 223 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 LPGAT1Q92604 370 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 SLC10A4Q96EP9 437 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 ZNF512Q96ME7 567 aaPredicted RBP12.26□□□□□ -0.45
CLIP3-201ENST00000360535 TSPYL2Q9H2G4 693 aaPredicted RBP12.26□□□□□ -0.45
CLIP3-201ENST00000360535 VTA1Q9NP79 307 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 GDAP2Q9NXN4 497 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 WDR90Q96KV7 1748 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 MAGEB16A2A368 324 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 FAM149AA5PLN7 773 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 SAC3D1A6NKF1 404 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 VILLO15195 856 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 APOA4P06727 396 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 PSMC3P17980 439 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 GJA5P36382 358 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 CDH15P55291 814 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 C1QTNF8P60827 252 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 KIF19Q2TAC6 998 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 ZNF792Q3KQV3 632 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 TFAP2DQ7Z6R9 452 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 IFNEQ86WN2 208 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 ABTB1Q969K4 478 aaPredicted RBP12.26□□□□□ -0.45
CLIP3-201ENST00000360535 TMIGD2Q96BF3 282 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 CCT7Q99832 543 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 MRPL46Q9H2W6 279 aaKnown RBP12.26□□□□□ -0.45
CLIP3-201ENST00000360535 RHBDL2Q9NX52 303 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 GTF2IRD1Q9UHL9 959 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 TRHDEQ9UKU6 1024 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 CRYL1Q9Y2S2 319 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 AP4S1Q9Y587 144 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 PTGDR2Q9Y5Y4 395 aa12.26□□□□□ -0.45
CLIP3-201ENST00000360535 OR51F1A6NGY5 319 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 PDHXO00330 501 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 SDHDO14521 159 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 UBDO15205 165 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 AKAP10O43572 662 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 USP46P62068 366 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 XIAPP98170 497 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 GRM2Q14416 872 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 FAM83EQ2M2I3 478 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 PCID2Q5JVF3 399 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 NT5C3BQ969T7 300 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 HDAC11Q96DB2 347 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 ZNF419Q96HQ0 510 aaPredicted RBP12.25□□□□□ -0.45
CLIP3-201ENST00000360535 PRICKLE1Q96MT3 831 aaPredicted RBP12.25□□□□□ -0.45
CLIP3-201ENST00000360535 SLC2A13Q96QE2 648 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 TMEM79Q9BSE2 394 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 BRD8Q9H0E9 1235 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 EGFL7Q9UHF1 273 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 BCAP29Q9UHQ4 241 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 FBXO5Q9UKT4 447 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 V9GYQ6 96 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 ARHGEF37A1IGU5 675 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 PTGESO14684 152 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 H2AFYO75367 372 aaKnown RBP12.25□□□□□ -0.45
CLIP3-201ENST00000360535 TNFAIP8O95379 198 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 UGT1A6P19224 532 aa12.25□□□□□ -0.45
CLIP3-201ENST00000360535 SCNN1AP37088 669 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms