RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 XKR6Q5GH73 641 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 NEPROQ6NW34 567 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 UTS2BQ765I0 119 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 P2RX7Q99572 595 aaKnown RBP18.54■□□□□ 0.56
SHANK1-202ENST00000359082 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.54■□□□□ 0.56
SHANK1-202ENST00000359082 DNMT3LQ9UJW3 386 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 FRMPD4Q14CM0 1322 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 ACAP1Q15027 740 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 AFTPHQ6ULP2 937 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 TMEM86AQ8N2M4 240 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 GAD1Q99259 594 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 CDH9Q9ULB4 789 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 TRUB2O95900 331 aaKnown RBP18.54■□□□□ 0.56
SHANK1-202ENST00000359082 IGFBP4P22692 258 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 CCDC185Q8N715 623 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 CXorf40BQ96DE9 158 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 TMCO1Q9UM00 188 aa18.54■□□□□ 0.56
SHANK1-202ENST00000359082 ASTN2O75129 1339 aaPredicted RBP18.54■□□□□ 0.56
SHANK1-202ENST00000359082 H7C0S8 307 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 TAF4O00268 1085 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 CHN2P52757 468 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 SNRPD1P62314 119 aaKnown RBP18.53■□□□□ 0.56
SHANK1-202ENST00000359082 SRSF11Q05519 484 aaKnown RBP18.53■□□□□ 0.56
SHANK1-202ENST00000359082 INTS11Q5TA45 600 aaKnown RBP18.53■□□□□ 0.56
SHANK1-202ENST00000359082 LRRC49Q8IUZ0 686 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 ZNF540Q8NDQ6 660 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 CRISPLD1Q9H336 500 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 COMMD9Q9P000 198 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 RPS6KA6Q9UK32 745 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 EML1O00423 815 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 COX4I1P13073 169 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 STAT5AP42229 794 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 ELF3P78545 371 aaPredicted RBP18.53■□□□□ 0.56
SHANK1-202ENST00000359082 TNK2Q07912 1038 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 MIIPQ5JXC2 388 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 CNSTQ6PJW8 725 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 MIR1-1HGQ9H1L0 117 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 LIN7AO14910 233 aaPredicted RBP18.53■□□□□ 0.56
SHANK1-202ENST00000359082 DDNO94850 711 aaPredicted RBP18.53■□□□□ 0.56
SHANK1-202ENST00000359082 CATP04040 527 aaKnown RBP18.53■□□□□ 0.56
SHANK1-202ENST00000359082 TSEN2Q8NCE0 465 aaKnown RBP18.53■□□□□ 0.56
SHANK1-202ENST00000359082 WNT8BQ93098 351 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 FAIM2Q9BWQ8 316 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 CCDC182A6NF36 153 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 RECQL5O94762 991 aaPredicted RBP18.53■□□□□ 0.56
SHANK1-202ENST00000359082 SNRPB2P08579 225 aaKnown RBP18.53■□□□□ 0.56
SHANK1-202ENST00000359082 LINC00032P0C843 101 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 USP46P62068 366 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 UNC5AQ6ZN44 842 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 NET1Q7Z628 596 aaPredicted RBP18.53■□□□□ 0.56
SHANK1-202ENST00000359082 OR4A15Q8NGL6 344 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 PLEKHG4BQ96PX9 1271 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 A0A087X0B3 334 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 SLC28A1O00337 649 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 NR2F1P10589 423 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 TGFB2P61812 414 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 MAMLD1Q13495 774 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 DLG3Q92796 817 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 RERGQ96A58 199 aaPredicted RBP18.53■□□□□ 0.56
SHANK1-202ENST00000359082 KIAA1683Q9H0B3 1180 aa18.53■□□□□ 0.56
SHANK1-202ENST00000359082 NOS2P35228 1153 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 NKAPQ8N5F7 415 aaKnown RBP18.52■□□□□ 0.56
SHANK1-202ENST00000359082 KLHL23Q8NBE8 558 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 SLC38A2Q96QD8 506 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 DUSP9Q99956 384 aaKnown RBP18.52■□□□□ 0.56
SHANK1-202ENST00000359082 CORO1BQ9BR76 489 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 A0A0A0MRY4 1105 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 LGALS2P05162 132 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 CCNYL3P0C7X3 344 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 TTC7BQ86TV6 843 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 KAT5Q92993 513 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 SPATA13Q96N96 652 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 MBD2Q9UBB5 411 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 AP3M1Q9Y2T2 418 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 ERN1O75460 977 aaKnown RBP18.52■□□□□ 0.56
SHANK1-202ENST00000359082 CTPS1P17812 591 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 TTMPQ5BVD1 217 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 FOXR1Q6PIV2 292 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 ZPBP2Q6X784 338 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 RHOBTB2Q9BYZ6 727 aa18.52■□□□□ 0.56
SHANK1-202ENST00000359082 MTRF1O75570 445 aaKnown RBP18.52■□□□□ 0.55
SHANK1-202ENST00000359082 LRATO95237 230 aa18.52■□□□□ 0.55
SHANK1-202ENST00000359082 DBTP11182 482 aaKnown RBP18.52■□□□□ 0.55
SHANK1-202ENST00000359082 ADSLP30566 484 aaPredicted RBP18.52■□□□□ 0.55
SHANK1-202ENST00000359082 MAP4K3Q8IVH8 894 aa18.52■□□□□ 0.55
SHANK1-202ENST00000359082 KCTD4Q8WVF5 259 aa18.52■□□□□ 0.55
SHANK1-202ENST00000359082 MCRS1Q96EZ8 462 aa18.52■□□□□ 0.55
SHANK1-202ENST00000359082 CRNNQ9UBG3 495 aaPredicted RBP18.52■□□□□ 0.55
SHANK1-202ENST00000359082 NRXN1Q9ULB1 1477 aa18.52■□□□□ 0.55
SHANK1-202ENST00000359082 B3GNT6Q6ZMB0 384 aa18.52■□□□□ 0.55
SHANK1-202ENST00000359082 ZFP28Q8NHY6 868 aa18.52■□□□□ 0.55
SHANK1-202ENST00000359082 TM6SF2Q9BZW4 377 aa18.52■□□□□ 0.55
SHANK1-202ENST00000359082 DIP2BQ9P265 1576 aa18.51■□□□□ 0.55
SHANK1-202ENST00000359082 WWP2O00308 870 aa18.51■□□□□ 0.55
SHANK1-202ENST00000359082 BTN3A3O00478 584 aa18.51■□□□□ 0.55
SHANK1-202ENST00000359082 FARP2O94887 1054 aaPredicted RBP18.51■□□□□ 0.55
SHANK1-202ENST00000359082 CCNB1P14635 433 aa18.51■□□□□ 0.55
SHANK1-202ENST00000359082 CXCL9Q07325 125 aa18.51■□□□□ 0.55
SHANK1-202ENST00000359082 ST3GAL1Q11201 340 aa18.51■□□□□ 0.55
SHANK1-202ENST00000359082 DEF8Q6ZN54 512 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms