RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 CMTM5Q96DZ9 223 aa15.62■□□□□ 0.09
UPF3B-202ENST00000345865 C1orf74Q96LT6 269 aa15.62■□□□□ 0.09
UPF3B-202ENST00000345865 LENG8Q96PV6 779 aaPredicted RBP15.62■□□□□ 0.09
UPF3B-202ENST00000345865 MRM3Q9HC36 420 aaKnown RBP15.62■□□□□ 0.09
UPF3B-202ENST00000345865 CCNT2O60583 730 aaKnown RBP15.61■□□□□ 0.09
UPF3B-202ENST00000345865 SMNDC1O75940 238 aaKnown RBP eCLIP15.61■□□□□ 0.09
UPF3B-202ENST00000345865 CKBP12277 381 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 STMN1P16949 149 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 PSEN1P49768 467 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 RPL14P50914 215 aaKnown RBP15.61■□□□□ 0.09
UPF3B-202ENST00000345865 EPHB1P54762 984 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 BTKQ06187 659 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 UGP2Q16851 508 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 LSM12Q3MHD2 195 aaKnown RBP15.61■□□□□ 0.09
UPF3B-202ENST00000345865 MS4A13Q5J8X5 152 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 MSANTD2Q6P1R3 559 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 GLB1LQ6UWU2 654 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 TMC7Q7Z402 723 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 UMODL1-AS1Q8N2C9 162 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 ATAD1Q8NBU5 361 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 ACTRT2Q8TDY3 377 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 PTCD2Q8WV60 388 aaKnown RBP15.61■□□□□ 0.09
UPF3B-202ENST00000345865 TTC1Q99614 292 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 NUF2Q9BZD4 464 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 NT5MQ9NPB1 228 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 FBXO5Q9UKT4 447 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 UPP2O95045 317 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 LUC7L3O95232 432 aaKnown RBP15.61■□□□□ 0.09
UPF3B-202ENST00000345865 MMP2P08253 660 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 CST5P28325 142 aaPredicted RBP15.61■□□□□ 0.09
UPF3B-202ENST00000345865 PSMD5Q16401 504 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 KIAA0930Q6ICG6 404 aaPredicted RBP15.61■□□□□ 0.09
UPF3B-202ENST00000345865 RNF111Q6ZNA4 994 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 DEFB107AQ8IZN7 70 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 SREK1Q8WXA9 508 aaKnown RBP15.61■□□□□ 0.09
UPF3B-202ENST00000345865 IMP4Q96G21 291 aaKnown RBP15.61■□□□□ 0.09
UPF3B-202ENST00000345865 ELMO2Q96JJ3 720 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 B3GALT6Q96L58 329 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 SLC25A51Q9H1U9 297 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 ATP13A1Q9HD20 1204 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 TBC1D13Q9NVG8 400 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 CDH22Q9UJ99 828 aa15.61■□□□□ 0.09
UPF3B-202ENST00000345865 ARHGEF37A1IGU5 675 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 HDAC3O15379 428 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 COL6A2P12110 1019 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 SERPINB5P36952 375 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 TBX4P57082 545 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 EFEMP1Q12805 493 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 CUL3Q13618 768 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 HNRNPDQ14103 355 aaKnown RBP15.6■□□□□ 0.09
UPF3B-202ENST00000345865 C6orf163Q5TEZ5 329 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 METTL21CQ5VZV1 264 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 NEPROQ6NW34 567 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 HEXDCQ8WVB3 486 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 UCMAQ8WVF2 138 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 IGSF8Q969P0 613 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 SGF29Q96ES7 293 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 NDNQ99608 321 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 OLFM1Q99784 485 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 ARNT2Q9HBZ2 717 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 MID2Q9UJV3 735 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 SSX2IPQ9Y2D8 614 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 NEMP2A6NFY4 417 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 TMEM233B4DJY2 109 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 GJB3O75712 270 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 CD86P42081 329 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 TM4SF4P48230 202 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 CD151P48509 253 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 DSC2Q02487 901 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 SREBF2Q12772 1141 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 CCNIQ14094 377 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 PPM1LQ5SGD2 360 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 VARS2Q5ST30 1063 aaKnown RBP15.6■□□□□ 0.09
UPF3B-202ENST00000345865 TMEM198Q66K66 360 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 SEL1L3Q68CR1 1132 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 SLC24A5Q71RS6 500 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 HPS6Q86YV9 775 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 TXNDC5Q8NBS9 432 aaKnown RBP15.6■□□□□ 0.09
UPF3B-202ENST00000345865 OR13J1Q8NGT2 312 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 PYDC1Q8WXC3 89 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 PSMG2Q969U7 264 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 CCDC124Q96CT7 223 aaKnown RBP15.6■□□□□ 0.09
UPF3B-202ENST00000345865 MYEOVQ96EZ4 313 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 C8orf48Q96LL4 319 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 TSNARE1Q96NA8 513 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 UBE2OQ9C0C9 1292 aaKnown RBP15.6■□□□□ 0.09
UPF3B-202ENST00000345865 GPAMQ9HCL2 828 aa15.6■□□□□ 0.09
UPF3B-202ENST00000345865 G3BP2Q9UN86 482 aaKnown RBP15.6■□□□□ 0.09
UPF3B-202ENST00000345865 THSD7BQ9C0I4 1608 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 CCL22O00626 93 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 SKAP2O75563 359 aaPredicted RBP15.59■□□□□ 0.09
UPF3B-202ENST00000345865 NEBLO76041 1014 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 EOMESO95936 686 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 NSUN2Q08J23 767 aaKnown RBP eCLIP15.59■□□□□ 0.09
UPF3B-202ENST00000345865 FSCBQ5H9T9 825 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 TMCO4Q5TGY1 634 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 LCA5Q86VQ0 697 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 CIR1Q86X95 450 aaPredicted RBP15.59■□□□□ 0.09
UPF3B-202ENST00000345865 LRRC49Q8IUZ0 686 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 DCP1BQ8IZD4 617 aaKnown RBP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms