RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 SYNCRIPO60506 623 aaKnown RBP4.83□□□□□ -1.64
CSMD3-203ENST00000343508 GCATO75600 419 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 IFNA14P01570 189 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 IL1BP01584 269 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 PRIM2P49643 509 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 MERTKQ12866 999 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 ZNF549Q6P9A3 640 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 METTL7BQ6UX53 244 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 SLCO6A1Q86UG4 719 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 OR52K1Q8NGK4 314 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 SERAC1Q96JX3 654 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 HIPK3Q9H422 1215 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 RGS18Q9NS28 235 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 XPR1Q9UBH6 696 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 EGFL7Q9UHF1 273 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 RREB1Q92766 1687 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 SLC22A1O15245 554 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 CSDE1O75534 798 aaKnown RBP4.83□□□□□ -1.64
CSMD3-203ENST00000343508 ABCB1P08183 1280 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-203ENST00000343508 ODC1P11926 461 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 GTF2H3Q13889 308 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 TMEM39BQ9GZU3 492 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 CDHR5Q9HBB8 845 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 SAMD4AQ9UPU9 718 aaKnown RBP4.83□□□□□ -1.64
CSMD3-203ENST00000343508 UBIAD1Q9Y5Z9 338 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 H0YJX3 145 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 GOT1P17174 413 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 ITGAXP20702 1163 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 MATKP42679 507 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 TKTL1P51854 596 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 DGCR6Q14129 220 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 FAM187BQ17R55 369 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 ZNF470Q6ECI4 717 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 APOBEC3HQ6NTF7 200 aaKnown RBP4.83□□□□□ -1.64
CSMD3-203ENST00000343508 CYP4Z1Q86W10 505 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 BLOC1S5Q8TDH9 187 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 SLC7A6OSQ96CW6 309 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-203ENST00000343508 ZBTB45Q96K62 511 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-203ENST00000343508 DNAJC1Q96KC8 554 aaKnown RBP4.83□□□□□ -1.64
CSMD3-203ENST00000343508 EPB41L1Q9H4G0 881 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 ZBTB26Q9HCK0 441 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 UBA2Q9UBT2 640 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-203ENST00000343508 RAPGEFL1Q9UHV5 662 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 PACSIN3Q9UKS6 424 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 JCHAINP01591 159 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 PCSK2P16519 638 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 DSG3P32926 999 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 ARL13AQ5H913 290 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-203ENST00000343508 AP3S1Q92572 193 aa4.83□□□□□ -1.64
CSMD3-203ENST00000343508 IGLV3-22A0A075B6J6 115 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CYB561D2O14569 222 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 PAPSS1O43252 624 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 NPM3O75607 178 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CPB1P15086 417 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 MAGEA10P43363 369 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 KLF1Q13351 362 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SH3D19Q5HYK7 790 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ATG14Q6ZNE5 492 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 NCCRP1Q6ZVX7 275 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 KBTBD8Q8NFY9 601 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 OMA1Q96E52 524 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 P2RY11Q96G91 374 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ACO2Q99798 780 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CEP41Q9BYV8 373 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 MUC3BQ9H195 1237 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 PLA2G4CQ9UP65 541 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 MAPRE3Q9UPY8 281 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TMED5Q9Y3A6 229 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SOX10P56693 466 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 FOXD4Q12950 439 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 INTS11Q5TA45 600 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ANKS6Q68DC2 871 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 REP15Q6BDI9 236 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 MZT2BQ6NZ67 158 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 PLEKHM3Q6ZWE6 761 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CDH24Q86UP0 819 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 EFCAB3Q8N7B9 438 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 METTL6Q8TCB7 284 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 LRTOMTQ8WZ04 291 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 MYDGFQ969H8 173 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TMEM9Q9P0T7 183 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 MTHFRP42898 656 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 PIK3CGP48736 1102 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SLC5A3P53794 718 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SLC18A2Q05940 514 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ITGA7Q13683 1181 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 PCBP1Q15365 356 aaKnown RBP eCLIP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 VWA5B1Q5TIE3 1220 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ANKRD22Q5VYY1 191 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 KLHL17Q6TDP4 642 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CES3Q6UWW8 571 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 DEPDC4Q8N2C3 294 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 UBASH3BQ8TF42 649 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ISOC1Q96CN7 298 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 BORCS6Q96GS4 357 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 HSFY1Q96LI6 401 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TUBA1CQ9BQE3 449 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 MYOZ2Q9NPC6 264 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CATSPERZQ9NTU4 200 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SLC15A5A6NIM6 579 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms