RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 TPGS1Q6ZTW0 290 aa15.65■□□□□ 0.1
LIMS1-202ENST00000338045 SH2D5Q6ZV89 423 aa15.65■□□□□ 0.1
LIMS1-202ENST00000338045 BHMTQ93088 406 aa15.65■□□□□ 0.1
LIMS1-202ENST00000338045 ZNF778Q96MU6 729 aa15.65■□□□□ 0.1
LIMS1-202ENST00000338045 SMC6Q96SB8 1091 aa15.65■□□□□ 0.1
LIMS1-202ENST00000338045 SFXN1Q9H9B4 322 aa15.65■□□□□ 0.1
LIMS1-202ENST00000338045 SLC28A3Q9HAS3 691 aa15.65■□□□□ 0.1
LIMS1-202ENST00000338045 INTS9Q9NV88 658 aaKnown RBP15.65■□□□□ 0.1
LIMS1-202ENST00000338045 KIAA1522Q9P206 1035 aaPredicted RBP15.65■□□□□ 0.1
LIMS1-202ENST00000338045 TBC1D14Q9P2M4 693 aa15.65■□□□□ 0.1
LIMS1-202ENST00000338045 CLEC4EQ9ULY5 219 aa15.65■□□□□ 0.1
LIMS1-202ENST00000338045 CXorf51AA0A1B0GTR3 108 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 TYROBPO43914 113 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 KRT37O76014 449 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 TMCC1O94876 653 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 PENKP01210 267 aaPredicted RBP15.64■□□□□ 0.09
LIMS1-202ENST00000338045 SNRPAP09012 282 aaKnown RBP15.64■□□□□ 0.09
LIMS1-202ENST00000338045 ERVK-10P10266 1014 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 KRT4P19013 534 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 CNTFP26441 200 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 SERPINH1P50454 418 aaKnown RBP15.64■□□□□ 0.09
LIMS1-202ENST00000338045 PLK1P53350 603 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 NSUN2Q08J23 767 aaKnown RBP eCLIP15.64■□□□□ 0.09
LIMS1-202ENST00000338045 LMAN2Q12907 356 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 KDELC2Q7Z4H8 507 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 ARID3BQ8IVW6 561 aaPredicted RBP15.64■□□□□ 0.09
LIMS1-202ENST00000338045 C12orf76Q8N812 135 aaPredicted RBP15.64■□□□□ 0.09
LIMS1-202ENST00000338045 PPHLN1Q8NEY8 458 aaKnown RBP15.64■□□□□ 0.09
LIMS1-202ENST00000338045 ITFG1Q8TB96 612 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 ACDQ96AP0 544 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 ALKBH8Q96BT7 664 aaKnown RBP15.64■□□□□ 0.09
LIMS1-202ENST00000338045 MTBPQ96DY7 904 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 NUDCD1Q96RS6 583 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 TRIB3Q96RU7 358 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 C2orf49Q9BVC5 232 aaPredicted RBP15.64■□□□□ 0.09
LIMS1-202ENST00000338045 PIDD1Q9HB75 910 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 NOD2Q9HC29 1040 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 PPANQ9NQ55 473 aaKnown RBP15.64■□□□□ 0.09
LIMS1-202ENST00000338045 TREX1Q9NSU2 369 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 PLK2Q9NYY3 685 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 SMG5Q9UPR3 1016 aaKnown RBP15.64■□□□□ 0.09
LIMS1-202ENST00000338045 CDH23Q9H251 3354 aa15.64■□□□□ 0.09
LIMS1-202ENST00000338045 HMX2A2RU54 273 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 FAM47DPA6NHR8 397 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 INSIG1O15503 277 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 KRT38O76015 456 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 HLA-DPA1P20036 260 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 PPARDQ03181 441 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 CDK18Q07002 472 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 SLC12A1Q13621 1099 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 SIRPB2Q5JXA9 342 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 TMC5Q6UXY8 1006 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 LINGO4Q6UY18 593 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 PACS1Q6VY07 963 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 TMEM25Q86YD3 366 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 APCDD1Q8J025 514 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 C4orf33Q8N1A6 199 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 SLC25A41Q8N5S1 370 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 KIAA1958Q8N8K9 716 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 OTUB2Q96DC9 234 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 NSMCE3Q96MG7 304 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 CCDC134Q9H6E4 229 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 KCNK9Q9NPC2 374 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 ZFATQ9P243 1243 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 MIA3Q5JRA6 1907 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 MT-ND3P03897 115 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 FGF1P05230 155 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 SLC18A2Q05940 514 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 CBX2Q14781 532 aaPredicted RBP15.63■□□□□ 0.09
LIMS1-202ENST00000338045 PLEKHG6Q3KR16 790 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 TEDDM1Q5T9Z0 273 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 COL13A1Q5TAT6 717 aaPredicted RBP15.63■□□□□ 0.09
LIMS1-202ENST00000338045 RETSATQ6NUM9 610 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 TIFABQ6ZNK6 161 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 RASSF3Q86WH2 238 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 DENND1AQ8TEH3 1009 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 ING5Q8WYH8 240 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 SERAC1Q96JX3 654 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 CPNE1Q99829 537 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 DZANK1Q9NVP4 752 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 IL1RAPL1Q9NZN1 696 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 SLC17A6Q9P2U8 582 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 LHX3Q9UBR4 397 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 INTS6Q9UL03 887 aaKnown RBP15.63■□□□□ 0.09
LIMS1-202ENST00000338045 ARIH1Q9Y4X5 557 aaPredicted RBP15.63■□□□□ 0.09
LIMS1-202ENST00000338045 PSAT1Q9Y617 370 aa15.63■□□□□ 0.09
LIMS1-202ENST00000338045 HEATR9A2RTY3 570 aa15.62■□□□□ 0.09
LIMS1-202ENST00000338045 TRIM49D1C9J1S8 452 aa15.62■□□□□ 0.09
LIMS1-202ENST00000338045 PAPSS2O95340 614 aaPredicted RBP15.62■□□□□ 0.09
LIMS1-202ENST00000338045 GP5P40197 560 aa15.62■□□□□ 0.09
LIMS1-202ENST00000338045 ARCN1P48444 511 aaKnown RBP15.62■□□□□ 0.09
LIMS1-202ENST00000338045 SCNN1BP51168 640 aa15.62■□□□□ 0.09
LIMS1-202ENST00000338045 DNAJC3Q13217 504 aa15.62■□□□□ 0.09
LIMS1-202ENST00000338045 RALGPS1Q5JS13 557 aa15.62■□□□□ 0.09
LIMS1-202ENST00000338045 PDPK2PQ6A1A2 396 aa15.62■□□□□ 0.09
LIMS1-202ENST00000338045 KCNMB4Q86W47 210 aa15.62■□□□□ 0.09
LIMS1-202ENST00000338045 BANPQ8N9N5 519 aa15.62■□□□□ 0.09
LIMS1-202ENST00000338045 IRF7Q92985 503 aa15.62■□□□□ 0.09
LIMS1-202ENST00000338045 MRPL38Q96DV4 380 aaKnown RBP15.62■□□□□ 0.09
LIMS1-202ENST00000338045 IFT43Q96FT9 208 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms