RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PKMP14618 531 aaKnown RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 OGNP20774 298 aaKnown RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CYP2A7P20853 494 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CXCR2P25025 360 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 SERPINB5P36952 375 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CD86P42081 329 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 NAGLUP54802 743 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 DMTNQ08495 405 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ITIH4Q14624 930 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 PLEKHG6Q3KR16 790 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ARMC6Q6NXE6 501 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CYS1Q717R9 158 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 PTAR1Q7Z6K3 402 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 MRPL1Q9BYD6 325 aaKnown RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 GPR62Q9BZJ7 368 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 DPEP3Q9H4B8 488 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 OGDHLQ9ULD0 1010 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 FIS1Q9Y3D6 152 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 PCDH8O95206 1070 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CALCAP01258 141 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 APODP05090 189 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 C2P06681 752 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ACADMP11310 421 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 MSH3P20585 1137 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 PFKPQ01813 784 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 FOXD4Q12950 439 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 DSC3Q14574 896 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 SYCP2LQ5T4T6 812 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 PM20D1Q6GTS8 502 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 BRSK1Q8TDC3 778 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 BPIFB1Q8TDL5 484 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 AZIN2Q96A70 460 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 MAGEB10Q96LZ2 347 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CDCA3Q99618 268 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 SH3GL1Q99961 368 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 EFCAB1Q9HAE3 211 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 HMGXB4Q9UGU5 601 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 C1orf232A0A0U1RR37 186 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ZSCAN5DPP0CG00 497 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ACRP10323 421 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 PABPC1P11940 636 aaKnown RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 TPH1P17752 444 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 FGFR3P22607 806 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 DGKGP49619 791 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ANXA11P50995 505 aaKnown RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 SEC24CP53992 1094 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 PTPN5P54829 565 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 SF3A3Q12874 501 aaKnown RBP eCLIP6.93□□□□□ -1.32e-9■■□□□ 11.6
SF3B1-201ENST00000335508 SETMARQ53H47 684 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CHST9Q7L1S5 443 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 TRPM8Q7Z2W7 1104 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 COLGALT2Q8IYK4 626 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 SLC2A13Q96QE2 648 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CEP41Q9BYV8 373 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 MYH3P11055 1940 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 FAM95CA0A1B0GW59 222 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CCDC189A1A4V9 331 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 HSPA1AP0DMV8 641 aaKnown RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 HSPA1BP0DMV9 641 aaKnown RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 LBX1P52954 281 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CAMK2GQ13555 558 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 STXBP5Q5T5C0 1151 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 METTL21CQ5VZV1 264 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ANKRD33Q7Z3H0 272 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CELF5Q8N6W0 485 aaKnown RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 OR2AP1Q8NGE2 309 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 STYXQ8WUJ0 223 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 TUBGCP3Q96CW5 907 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 HEPHQ9BQS7 1158 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 KATNBL1Q9H079 304 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ZDHHC7Q9NXF8 308 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 GGA2Q9UJY4 613 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ANGPTL2Q9UKU9 493 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 TBX21Q9UL17 535 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 AP3M1Q9Y2T2 418 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 N4BP2Q86UW6 1770 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 MYADML2A6NDP7 307 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 HDAC3O15379 428 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CFLARO15519 480 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ALDH1A2O94788 518 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CDK14O94921 469 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 TIMP1P01033 207 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 THRAP10827 490 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ARHGDIAP52565 204 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 TRIM32Q13049 653 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 MAD2L1Q13257 205 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 BMPR2Q13873 1038 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 CSHL1Q14406 222 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 FAM45BPQ6NSW5 357 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 FAM45AQ8TCE6 357 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 SH3RF2Q8TEC5 729 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 KBTBD7Q8WVZ9 684 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 SLC44A1Q8WWI5 657 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 SPOCK2Q92563 424 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ZNF333Q96JL9 665 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 SPATA17Q96L03 361 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 QRFPRQ96P65 431 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 FAM126AQ9BYI3 521 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ARHGAP26Q9UNA1 814 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms