RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 NUP93Q8N1F7 819 aa13.03□□□□□ -0.32
HMGCS1-201ENST00000325110 MYO1HQ8N1T3 1032 aa13.03□□□□□ -0.32
HMGCS1-201ENST00000325110 LINC01465Q8N7H1 131 aa13.03□□□□□ -0.32
HMGCS1-201ENST00000325110 DQX1Q8TE96 717 aaKnown RBP13.03□□□□□ -0.32
HMGCS1-201ENST00000325110 CIB1Q99828 191 aa13.03□□□□□ -0.32
HMGCS1-201ENST00000325110 TMEM30AQ9NV96 361 aa13.03□□□□□ -0.32
HMGCS1-201ENST00000325110 OR51F1A6NGY5 319 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 ERI2A8K979 691 aaKnown RBP13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 H2AFYO75367 372 aaKnown RBP13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 PGK1P00558 417 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 FYNP06241 537 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 GJA5P36382 358 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 IL23RQ5VWK5 629 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 KBTBD6Q86V97 674 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 MIB1Q86YT6 1006 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 BLOC1S5Q8TDH9 187 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 GPR22Q99680 433 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 WDR6Q9NNW5 1121 aaKnown RBP13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 DMAP1Q9NPF5 467 aaPredicted RBP13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 CNGB3Q9NQW8 809 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 ABI2Q9NYB9 513 aaPredicted RBP13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 GIMAP2Q9UG22 337 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 RNF103-CHMP3A0A140T963 221 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 ARHGEF37A1IGU5 675 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 TRPC5OSA6NMA1 111 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 PSMD12O00232 456 aaPredicted RBP13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 MRASO14807 208 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 OR4Q2P0C623 313 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 FAM58BPP0C7Q3 252 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 PCSK1P29120 753 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 CCR1P32246 355 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 GRIA2P42262 883 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 PSEN2P49810 448 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 PLOD1Q02809 727 aaPredicted RBP13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 TOP6BLQ8N6T0 577 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 TXNDC5Q8NBS9 432 aaKnown RBP13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 B4GALNT2Q8NHY0 566 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 LRTOMTQ8WZ04 291 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 SMARCD1Q96GM5 515 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 UPF3AQ9H1J1 476 aaKnown RBP13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 SP110Q9HB58 689 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 FBRSL1Q9HCM7 1045 aaKnown RBP13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 GDAP2Q9NXN4 497 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 NSMCE4AQ9NXX6 385 aa13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 C6orf203Q9P0P8 240 aaPredicted RBP13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 PRPF19Q9UMS4 504 aaKnown RBP13.02□□□□□ -0.32
HMGCS1-201ENST00000325110 SHROOM3Q8TF72 1996 aa13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 NCF1BA6NI72 391 aaPredicted RBP13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 NCF1CA8MVU1 366 aaPredicted RBP13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 GRID2O43424 1007 aa13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 GFAPP14136 432 aa13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 NCF1P14598 390 aaPredicted RBP13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 YWHAQP27348 245 aa13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 PLIN5Q00G26 463 aa13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 TMED1Q13445 227 aa13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 MTX3Q5HYI7 312 aa13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 CENPLQ8N0S6 344 aaPredicted RBP13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 EMID1Q96A84 441 aaPredicted RBP13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 FCRL2Q96LA5 508 aaPredicted RBP13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 TMEM79Q9BSE2 394 aa13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 ETAA1Q9NY74 926 aa13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 EGFL7Q9UHF1 273 aa13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 RLFQ13129 1914 aa13.02□□□□□ -0.33
HMGCS1-201ENST00000325110 C17orf102A2RUQ5 167 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 PTGESO14684 152 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 PFDN1O60925 122 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 PAGE1O75459 146 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 GABRB3P28472 473 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 ADGRE1Q14246 886 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 NADK2Q4G0N4 442 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 ZNF789Q5FWF6 425 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 PLEKHH3Q7Z736 793 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 PGAM4Q8N0Y7 254 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 NPLOC4Q8TAT6 608 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 TRIM8Q9BZR9 551 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 UBE2OQ9C0C9 1292 aaKnown RBP13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 GLOD4Q9HC38 313 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 E7ENX8 843 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 TIPRLO75663 272 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 CD86P42081 329 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 LHX1P48742 406 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 GEMP55040 296 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 NSUN2Q08J23 767 aaKnown RBP eCLIP13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 STX5Q13190 355 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 AGAP9Q5VTM2 703 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 GPR152Q8TDT2 470 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 NDFIP2Q9NV92 336 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 VTI1BQ9UEU0 232 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 IPO11Q9UI26 975 aaKnown RBP13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 NOD1Q9Y239 953 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 ANKRD6Q9Y2G4 727 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 AP4S1Q9Y587 144 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 HEATR9A2RTY3 570 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 FAM149AA5PLN7 773 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 H3BNX3 289 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 SRP72O76094 671 aaKnown RBP13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 CKMT2P17540 419 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 GLDCP23378 1020 aa13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 WARSP23381 471 aaKnown RBP13.01□□□□□ -0.33
HMGCS1-201ENST00000325110 EPHX2P34913 555 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms